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| Mutant Information |
|---|
| Mutant Name | FN-399 [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN-399 Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 32
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 5917019 | T-A | Hetero | INTERGENIC | |
| SBS | Chr1 | 7982685 | G-C | Hetero | NON_SYNONYMOUS_CODING | OsKitaake01g099900 |
| SBS | Chr1 | 8922530 | T-A | Hetero | INTERGENIC | |
| SBS | Chr1 | 8922532 | C-T | Hetero | INTERGENIC | |
| SBS | Chr1 | 14421255 | T-A | Hetero | INTERGENIC | |
| SBS | Chr1 | 36925759 | C-T | Hetero | INTERGENIC | |
| SBS | Chr2 | 1008923 | T-C | Homo | INTERGENIC | |
| SBS | Chr2 | 4876000 | A-G | Hetero | INTERGENIC | |
| SBS | Chr2 | 11626995 | T-A | Hetero | INTERGENIC | |
| SBS | Chr2 | 24714097 | T-G | Hetero | INTERGENIC | |
| SBS | Chr3 | 10436498 | T-A | Hetero | INTERGENIC | |
| SBS | Chr3 | 15846585 | C-G | Hetero | INTRON | |
| SBS | Chr4 | 7298990 | G-A | Hetero | INTERGENIC | |
| SBS | Chr4 | 20939848 | G-A | Hetero | INTERGENIC | |
| SBS | Chr4 | 21922123 | C-G | Homo | NON_SYNONYMOUS_CODING | OsKitaake04g127000 |
| SBS | Chr5 | 7470320 | A-G | Hetero | INTERGENIC | |
| SBS | Chr5 | 8468910 | G-T | Hetero | INTERGENIC | |
| SBS | Chr5 | 11798884 | C-T | Hetero | INTERGENIC | |
| SBS | Chr6 | 9390010 | G-A | Homo | INTERGENIC | |
| SBS | Chr6 | 12923495 | C-T | Hetero | INTERGENIC | |
| SBS | Chr6 | 27771362 | G-A | Homo | INTRON | |
| SBS | Chr7 | 15040318 | T-C | Hetero | INTERGENIC | |
| SBS | Chr7 | 20481609 | G-C | Hetero | INTERGENIC | |
| SBS | Chr8 | 18969110 | G-C | Homo | INTERGENIC | |
| SBS | Chr8 | 23627937 | G-C | Homo | NON_SYNONYMOUS_CODING | OsKitaake08g181700 |
| SBS | Chr9 | 5355358 | G-T | Homo | INTERGENIC | |
| SBS | Chr9 | 9249282 | C-T | Hetero | INTERGENIC | |
| SBS | Chr9 | 14085710 | A-T | Hetero | INTERGENIC | |
| SBS | Chr9 | 14144855 | G-A | Hetero | SYNONYMOUS_CODING | |
| SBS | Chr11 | 12330703 | C-T | Homo | INTERGENIC | |
| SBS | Chr11 | 19253277 | C-T | Hetero | INTERGENIC | |
| SBS | Chr12 | 101144 | G-T | Hetero | INTERGENIC |
Deletions: 5
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr6 | 10071967 | 10071970 | 3 | |
| Deletion | Chr5 | 10119539 | 10119541 | 2 | OsKitaake05g089901 |
| Deletion | Chr8 | 20300805 | 20300808 | 3 | |
| Deletion | Chr2 | 21732657 | 21732658 | 1 | |
| Deletion | Chr5 | 28803681 | 28803682 | 1 |
Insertions: 2
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Insertion | Chr11 | 6911789 | 6911792 | 2 | |
| Insertion | Chr5 | 12594783 | 12594785 | 1 |
Inversions: 2
Variant Type |
Chromosome |
Position 1 |
Position 2 |
Number of Genes |
| Inversion | Chr9 | 19260403 | 19536546 | OsKitaake09g159500 |
| Inversion | Chr9 | 19260408 | 19536557 | OsKitaake09g159500 |
Translocations: 2
Variant Type |
Chromosome |
Position 1 |
Chromosome |
Position 2 |
Number of Genes |
| Translocation | Chr7 | 6473102 | Chr1 | 31233095 | OsKitaake01g312500 |
| Translocation | Chr7 | 6473115 | Chr1 | 31233387 | OsKitaake01g312500 |