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| Mutant Information |
|---|
| Mutant Name | FN-400 [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN-400 Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 29
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 1566072 | C-T | Hetero | INTRON | |
| SBS | Chr1 | 3871010 | C-A | Hetero | UTR_3_PRIME | |
| SBS | Chr1 | 18387234 | C-G | Hetero | INTERGENIC | |
| SBS | Chr1 | 29265233 | C-T | Hetero | INTERGENIC | |
| SBS | Chr2 | 9727757 | G-A | Hetero | INTERGENIC | |
| SBS | Chr2 | 15100289 | A-T | Homo | INTRON | |
| SBS | Chr2 | 15504690 | G-C | Homo | NON_SYNONYMOUS_CODING | OsKitaake02g160700 |
| SBS | Chr3 | 10390390 | A-C | Hetero | INTRON | |
| SBS | Chr3 | 15334229 | C-A | Hetero | INTERGENIC | |
| SBS | Chr3 | 15334230 | C-T | Hetero | INTERGENIC | |
| SBS | Chr3 | 23924103 | A-T | Hetero | INTERGENIC | |
| SBS | Chr4 | 3194638 | G-A | Hetero | INTERGENIC | |
| SBS | Chr4 | 14334518 | T-A | Hetero | INTERGENIC | |
| SBS | Chr4 | 31984414 | C-T | Hetero | SYNONYMOUS_CODING | |
| SBS | Chr5 | 29244554 | C-T | Homo | INTRON | |
| SBS | Chr6 | 24310628 | C-T | Hetero | INTERGENIC | |
| SBS | Chr6 | 26009701 | T-A | Hetero | INTERGENIC | |
| SBS | Chr7 | 17338523 | A-G | Hetero | INTERGENIC | |
| SBS | Chr7 | 28487845 | G-C | Hetero | SYNONYMOUS_CODING | |
| SBS | Chr8 | 12245728 | T-C | Hetero | INTERGENIC | |
| SBS | Chr9 | 15912923 | T-A | Homo | INTERGENIC | |
| SBS | Chr10 | 7338721 | C-T | Hetero | INTERGENIC | |
| SBS | Chr10 | 18678758 | T-A | Homo | INTERGENIC | |
| SBS | Chr10 | 22311405 | C-T | Homo | INTERGENIC | |
| SBS | Chr10 | 22311406 | A-T | Homo | INTERGENIC | |
| SBS | Chr11 | 11684074 | C-T | Homo | INTERGENIC | |
| SBS | Chr11 | 14890324 | A-G | Homo | INTERGENIC | |
| SBS | Chr11 | 21995477 | A-T | Hetero | INTERGENIC | |
| SBS | Chr12 | 9191218 | G-A | Hetero | INTERGENIC |
Deletions: 12
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr10 | 11331254 | 11331256 | 2 | |
| Deletion | Chr4 | 12014558 | 12014559 | 1 | |
| Deletion | Chr12 | 12214586 | 12214588 | 2 | |
| Deletion | Chr2 | 12798232 | 12798238 | 6 | |
| Deletion | Chr1 | 22395015 | 22395187 | 172 | |
| Deletion | Chr1 | 23692627 | 23692628 | 1 | |
| Deletion | Chr8 | 25509837 | 25509844 | 7 | OsKitaake08g200900 |
| Deletion | Chr5 | 25925642 | 25925736 | 94 | |
| Deletion | Chr11 | 27196001 | 27315000 | 118999 | 11 |
| Deletion | Chr6 | 30428173 | 30428174 | 1 | OsKitaake06g286000 |
| Deletion | Chr4 | 30787001 | 30836000 | 48999 | 14 |
| Deletion | Chr1 | 35763136 | 35763137 | 1 | OsKitaake01g378700 |
Insertions: 2
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Insertion | Chr10 | 11954907 | 11954910 | 2 | |
| Insertion | Chr8 | 2708292 | 2708294 | 1 |
Inversions: 4
Variant Type |
Chromosome |
Position 1 |
Position 2 |
Number of Genes |
| Inversion | Chr8 | 1375176 | 1899999 | |
| Inversion | Chr8 | 1375182 | 1900298 | |
| Inversion | Chr9 | 9927684 | 10091991 | |
| Inversion | Chr9 | 10054934 | 10091997 | OsKitaake09g061300 |
Translocations: 1
Variant Type |
Chromosome |
Position 1 |
Chromosome |
Position 2 |
Number of Genes |
| Translocation | Chr10 | 8667844 | Chr1 | 17283746 |