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Mutant Information

Mutant Name	FN-401 [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN-401 Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 20

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 613798 C-T Hetero INTERGENIC
SBS Chr1 5180606 T-C Hetero INTERGENIC
SBS Chr1 17452571 C-T Hetero INTERGENIC
SBS Chr1 30965167 T-C Hetero INTERGENIC
SBS Chr2 3652809 G-A Hetero INTERGENIC
SBS Chr2 18046981 G-A Homo INTERGENIC
SBS Chr3 1406285 G-C Homo NON_SYNONYMOUS_CODING OsKitaake03g020400
SBS Chr3 19762463 C-T Hetero INTERGENIC
SBS Chr3 32470285 A-T Homo INTERGENIC
SBS Chr4 34901981 G-A Homo INTRON
SBS Chr5 29012673 C-T Hetero INTERGENIC
SBS Chr8 27202823 T-C Hetero INTRON
SBS Chr9 3438035 G-A Hetero INTERGENIC
SBS Chr9 14077839 G-A Hetero INTERGENIC
SBS Chr10 19931258 G-A Hetero NON_SYNONYMOUS_CODING OsKitaake10g149800
SBS Chr10 19931259 G-A Hetero NON_SYNONYMOUS_CODING OsKitaake10g149800
SBS Chr11 8547393 C-T Hetero INTERGENIC
SBS Chr11 23293922 C-T Hetero INTERGENIC
SBS Chr11 24317430 A-T Hetero INTERGENIC
SBS Chr12 4329207 G-A Hetero INTERGENIC

Deletions: 25

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr11 657001 666000 8999 OsKitaake11g007900
Deletion Chr3 2026001 2057000 30999 6
Deletion Chr12 2576999 2577000 1
Deletion Chr11 3479001 3631000 151999 17
Deletion Chr1 3891005 3891007 2
Deletion Chr7 5295296 5295297 1
Deletion Chr5 7457769 7457965 196 OsKitaake05g074500
Deletion Chr9 7641682 7641683 1
Deletion Chr7 10588587 10588588 1
Deletion Chr6 13283238 13283401 163 OsKitaake06g140200
Deletion Chr1 13429001 13442000 12999 OsKitaake01g156400
Deletion Chr9 14253506 14253507 1 OsKitaake09g095900
Deletion Chr11 14512367 14512374 7
Deletion Chr2 15356992 15356993 1 OsKitaake02g160100
Deletion Chr3 15996493 15996496 3
Deletion Chr3 16528056 16528058 2
Deletion Chr3 16652864 16652955 91
Deletion Chr11 17430107 17430111 4
Deletion Chr2 18117140 18117141 1
Deletion Chr3 21439103 21439222 119
Deletion Chr1 21954334 21954337 3
Deletion Chr6 24831001 24860000 28999 3
Deletion Chr6 27790779 27790781 2
Deletion Chr1 29427008 29427010 2
Deletion Chr1 39862188 39862298 110

Insertions: 3

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr3 6209644 6209647 2
Insertion Chr7 26345964 26345967 2
Insertion Chr5 16011110 16011112 1

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	613798	C-T	Hetero	INTERGENIC
SBS	Chr1	5180606	T-C	Hetero	INTERGENIC
SBS	Chr1	17452571	C-T	Hetero	INTERGENIC
SBS	Chr1	30965167	T-C	Hetero	INTERGENIC
SBS	Chr2	3652809	G-A	Hetero	INTERGENIC
SBS	Chr2	18046981	G-A	Homo	INTERGENIC
SBS	Chr3	1406285	G-C	Homo	NON_SYNONYMOUS_CODING	OsKitaake03g020400
SBS	Chr3	19762463	C-T	Hetero	INTERGENIC
SBS	Chr3	32470285	A-T	Homo	INTERGENIC
SBS	Chr4	34901981	G-A	Homo	INTRON
SBS	Chr5	29012673	C-T	Hetero	INTERGENIC
SBS	Chr8	27202823	T-C	Hetero	INTRON
SBS	Chr9	3438035	G-A	Hetero	INTERGENIC
SBS	Chr9	14077839	G-A	Hetero	INTERGENIC
SBS	Chr10	19931258	G-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake10g149800
SBS	Chr10	19931259	G-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake10g149800
SBS	Chr11	8547393	C-T	Hetero	INTERGENIC
SBS	Chr11	23293922	C-T	Hetero	INTERGENIC
SBS	Chr11	24317430	A-T	Hetero	INTERGENIC
SBS	Chr12	4329207	G-A	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr11	657001	666000	8999	OsKitaake11g007900
Deletion	Chr3	2026001	2057000	30999	6
Deletion	Chr12	2576999	2577000	1
Deletion	Chr11	3479001	3631000	151999	17
Deletion	Chr1	3891005	3891007	2
Deletion	Chr7	5295296	5295297	1
Deletion	Chr5	7457769	7457965	196	OsKitaake05g074500
Deletion	Chr9	7641682	7641683	1
Deletion	Chr7	10588587	10588588	1
Deletion	Chr6	13283238	13283401	163	OsKitaake06g140200
Deletion	Chr1	13429001	13442000	12999	OsKitaake01g156400
Deletion	Chr9	14253506	14253507	1	OsKitaake09g095900
Deletion	Chr11	14512367	14512374	7
Deletion	Chr2	15356992	15356993	1	OsKitaake02g160100
Deletion	Chr3	15996493	15996496	3
Deletion	Chr3	16528056	16528058	2
Deletion	Chr3	16652864	16652955	91
Deletion	Chr11	17430107	17430111	4
Deletion	Chr2	18117140	18117141	1
Deletion	Chr3	21439103	21439222	119
Deletion	Chr1	21954334	21954337	3
Deletion	Chr6	24831001	24860000	28999	3
Deletion	Chr6	27790779	27790781	2
Deletion	Chr1	29427008	29427010	2
Deletion	Chr1	39862188	39862298	110

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes