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Mutant Information

Mutant Name	FN-402 [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN-402 Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 36

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr2 36325649 A-C Homo INTERGENIC
SBS Chr3 13659546 C-T Homo INTERGENIC
SBS Chr3 16604476 A-G Hetero INTERGENIC
SBS Chr3 17847574 C-T Hetero INTERGENIC
SBS Chr3 23672461 G-A Hetero INTERGENIC
SBS Chr3 27433558 T-C Hetero INTERGENIC
SBS Chr3 29964560 G-A Hetero INTERGENIC
SBS Chr4 2510783 A-T Hetero NON_SYNONYMOUS_CODING OsKitaake04g015300
SBS Chr4 10354897 A-G Hetero INTERGENIC
SBS Chr4 11515248 A-G Hetero INTERGENIC
SBS Chr6 1879374 T-C Hetero INTERGENIC
SBS Chr6 3874322 C-T Hetero INTERGENIC
SBS Chr6 4022068 C-T Hetero INTERGENIC
SBS Chr7 210348 T-C Homo INTRON
SBS Chr7 14716247 G-A Hetero INTERGENIC
SBS Chr7 18342434 G-A Hetero NON_SYNONYMOUS_CODING OsKitaake07g148200
SBS Chr7 18342438 T-A Hetero SYNONYMOUS_CODING
SBS Chr8 1770949 G-T Hetero INTERGENIC
SBS Chr8 8234327 T-A Homo INTERGENIC
SBS Chr8 18561316 C-T Hetero INTERGENIC
SBS Chr8 20510921 C-A Hetero INTERGENIC
SBS Chr9 8207330 C-T Hetero INTERGENIC
SBS Chr9 18395619 A-G Hetero INTRON
SBS Chr9 19785738 C-T Hetero NON_SYNONYMOUS_CODING OsKitaake09g163600
SBS Chr9 22452965 C-T Homo START_GAINED
SBS Chr10 5818702 C-T Hetero INTERGENIC
SBS Chr10 20874542 A-T Homo INTERGENIC
SBS Chr10 23962193 A-T Hetero UTR_3_PRIME
SBS Chr10 23962197 G-A Hetero UTR_3_PRIME
SBS Chr11 9766733 T-A Hetero INTERGENIC
SBS Chr11 21475068 C-A Homo NON_SYNONYMOUS_CODING OsKitaake11g169700
SBS Chr11 21475069 T-A Homo SYNONYMOUS_CODING
SBS Chr11 29014713 T-A Hetero SYNONYMOUS_CODING
SBS Chr12 2021245 A-C Homo INTERGENIC
SBS Chr12 20827316 A-C Hetero INTERGENIC
SBS Chr12 23599007 G-A Hetero INTERGENIC

Deletions: 20

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr11 1855682 1855684 2
Deletion Chr6 6466487 6466489 2
Deletion Chr3 7725407 7725623 216
Deletion Chr11 9222062 9222151 89
Deletion Chr8 10790403 10790421 18
Deletion Chr12 11657933 11658552 619
Deletion Chr5 13026971 13026976 5
Deletion Chr12 15312620 15312711 91
Deletion Chr9 15554831 15554928 97
Deletion Chr2 18332282 18332285 3
Deletion Chr11 19401569 19401576 7
Deletion Chr8 19719664 19719665 1
Deletion Chr1 20399653 20399655 2
Deletion Chr6 22150013 22150033 20
Deletion Chr1 22946001 22979000 32999 2
Deletion Chr2 24054340 24054343 3
Deletion Chr4 24598146 24598148 2
Deletion Chr2 25783172 25783180 8
Deletion Chr1 28161189 28161527 338
Deletion Chr5 30010995 30011347 352

Insertions: 4

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr1 44159912 44159919 6 OsKitaake01g493050
Insertion Chr10 2182883 2182886 2
Insertion Chr5 15424490 15424492 1 OsKitaake05g118300
Insertion Chr8 9073214 9073218 3

Translocations: 2

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr2 31679538 Chr1 22978592 OsKitaake01g218700
Translocation Chr2 31680460 Chr1 22944820

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr2	36325649	A-C	Homo	INTERGENIC
SBS	Chr3	13659546	C-T	Homo	INTERGENIC
SBS	Chr3	16604476	A-G	Hetero	INTERGENIC
SBS	Chr3	17847574	C-T	Hetero	INTERGENIC
SBS	Chr3	23672461	G-A	Hetero	INTERGENIC
SBS	Chr3	27433558	T-C	Hetero	INTERGENIC
SBS	Chr3	29964560	G-A	Hetero	INTERGENIC
SBS	Chr4	2510783	A-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake04g015300
SBS	Chr4	10354897	A-G	Hetero	INTERGENIC
SBS	Chr4	11515248	A-G	Hetero	INTERGENIC
SBS	Chr6	1879374	T-C	Hetero	INTERGENIC
SBS	Chr6	3874322	C-T	Hetero	INTERGENIC
SBS	Chr6	4022068	C-T	Hetero	INTERGENIC
SBS	Chr7	210348	T-C	Homo	INTRON
SBS	Chr7	14716247	G-A	Hetero	INTERGENIC
SBS	Chr7	18342434	G-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake07g148200
SBS	Chr7	18342438	T-A	Hetero	SYNONYMOUS_CODING
SBS	Chr8	1770949	G-T	Hetero	INTERGENIC
SBS	Chr8	8234327	T-A	Homo	INTERGENIC
SBS	Chr8	18561316	C-T	Hetero	INTERGENIC
SBS	Chr8	20510921	C-A	Hetero	INTERGENIC
SBS	Chr9	8207330	C-T	Hetero	INTERGENIC
SBS	Chr9	18395619	A-G	Hetero	INTRON
SBS	Chr9	19785738	C-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake09g163600
SBS	Chr9	22452965	C-T	Homo	START_GAINED
SBS	Chr10	5818702	C-T	Hetero	INTERGENIC
SBS	Chr10	20874542	A-T	Homo	INTERGENIC
SBS	Chr10	23962193	A-T	Hetero	UTR_3_PRIME
SBS	Chr10	23962197	G-A	Hetero	UTR_3_PRIME
SBS	Chr11	9766733	T-A	Hetero	INTERGENIC
SBS	Chr11	21475068	C-A	Homo	NON_SYNONYMOUS_CODING	OsKitaake11g169700
SBS	Chr11	21475069	T-A	Homo	SYNONYMOUS_CODING
SBS	Chr11	29014713	T-A	Hetero	SYNONYMOUS_CODING
SBS	Chr12	2021245	A-C	Homo	INTERGENIC
SBS	Chr12	20827316	A-C	Hetero	INTERGENIC
SBS	Chr12	23599007	G-A	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr11	1855682	1855684	2
Deletion	Chr6	6466487	6466489	2
Deletion	Chr3	7725407	7725623	216
Deletion	Chr11	9222062	9222151	89
Deletion	Chr8	10790403	10790421	18
Deletion	Chr12	11657933	11658552	619
Deletion	Chr5	13026971	13026976	5
Deletion	Chr12	15312620	15312711	91
Deletion	Chr9	15554831	15554928	97
Deletion	Chr2	18332282	18332285	3
Deletion	Chr11	19401569	19401576	7
Deletion	Chr8	19719664	19719665	1
Deletion	Chr1	20399653	20399655	2
Deletion	Chr6	22150013	22150033	20
Deletion	Chr1	22946001	22979000	32999	2
Deletion	Chr2	24054340	24054343	3
Deletion	Chr4	24598146	24598148	2
Deletion	Chr2	25783172	25783180	8
Deletion	Chr1	28161189	28161527	338
Deletion	Chr5	30010995	30011347	352

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr2	31679538	Chr1	22978592	OsKitaake01g218700
Translocation	Chr2	31680460	Chr1	22944820

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes