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Mutant Information

Mutant Name	FN-403 [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN-403 Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 22

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 9623085 G-T Hetero INTRON
SBS Chr1 9623086 A-T Hetero INTRON
SBS Chr1 11787224 T-A Hetero INTERGENIC
SBS Chr1 13519699 T-A Hetero INTERGENIC
SBS Chr1 21386054 T-G Hetero INTERGENIC
SBS Chr2 6147700 C-T Hetero INTERGENIC
SBS Chr2 22869513 A-G Homo INTERGENIC
SBS Chr3 14106186 T-C Hetero INTRON
SBS Chr3 28299626 G-A Homo INTERGENIC
SBS Chr3 36489061 A-G Homo UTR_5_PRIME
SBS Chr5 258613 A-C Homo INTRON
SBS Chr5 7997107 G-A Homo INTERGENIC
SBS Chr6 12088877 A-G Hetero INTERGENIC
SBS Chr7 6424199 A-G Hetero INTERGENIC
SBS Chr7 11125089 G-A Hetero INTERGENIC
SBS Chr8 24168125 A-G Homo INTERGENIC
SBS Chr9 13769531 G-A Hetero INTERGENIC
SBS Chr9 21741791 C-T Hetero INTRON
SBS Chr10 1924611 C-T Hetero INTERGENIC
SBS Chr11 7774795 G-T Homo INTRON
SBS Chr11 16283382 A-G Hetero INTERGENIC
SBS Chr11 17150793 C-T Hetero INTERGENIC

Deletions: 14

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr3 708292 708299 7
Deletion Chr9 2736177 2736178 1
Deletion Chr7 2835537 2835539 2
Deletion Chr1 4451871 4451964 93
Deletion Chr10 5595185 5595186 1
Deletion Chr8 6949879 6949880 1
Deletion Chr6 8714001 8889000 174999 5
Deletion Chr12 8900280 8900282 2
Deletion Chr11 15005257 15005260 3
Deletion Chr3 18897752 18897754 2 OsKitaake03g227200
Deletion Chr2 28696001 28707000 10999 2
Deletion Chr2 29915322 29915323 1
Deletion Chr4 32666001 32732000 65999 14
Deletion Chr1 32690884 32690885 1

Inversions: 4

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr1 7326800 7617094 OsKitaake01g091900
Inversion Chr1 7326835 7617095 OsKitaake01g091900
Inversion Chr9 13662681 13665233
Inversion Chr9 13662710 13665250

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	9623085	G-T	Hetero	INTRON
SBS	Chr1	9623086	A-T	Hetero	INTRON
SBS	Chr1	11787224	T-A	Hetero	INTERGENIC
SBS	Chr1	13519699	T-A	Hetero	INTERGENIC
SBS	Chr1	21386054	T-G	Hetero	INTERGENIC
SBS	Chr2	6147700	C-T	Hetero	INTERGENIC
SBS	Chr2	22869513	A-G	Homo	INTERGENIC
SBS	Chr3	14106186	T-C	Hetero	INTRON
SBS	Chr3	28299626	G-A	Homo	INTERGENIC
SBS	Chr3	36489061	A-G	Homo	UTR_5_PRIME
SBS	Chr5	258613	A-C	Homo	INTRON
SBS	Chr5	7997107	G-A	Homo	INTERGENIC
SBS	Chr6	12088877	A-G	Hetero	INTERGENIC
SBS	Chr7	6424199	A-G	Hetero	INTERGENIC
SBS	Chr7	11125089	G-A	Hetero	INTERGENIC
SBS	Chr8	24168125	A-G	Homo	INTERGENIC
SBS	Chr9	13769531	G-A	Hetero	INTERGENIC
SBS	Chr9	21741791	C-T	Hetero	INTRON
SBS	Chr10	1924611	C-T	Hetero	INTERGENIC
SBS	Chr11	7774795	G-T	Homo	INTRON
SBS	Chr11	16283382	A-G	Hetero	INTERGENIC
SBS	Chr11	17150793	C-T	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr3	708292	708299	7
Deletion	Chr9	2736177	2736178	1
Deletion	Chr7	2835537	2835539	2
Deletion	Chr1	4451871	4451964	93
Deletion	Chr10	5595185	5595186	1
Deletion	Chr8	6949879	6949880	1
Deletion	Chr6	8714001	8889000	174999	5
Deletion	Chr12	8900280	8900282	2
Deletion	Chr11	15005257	15005260	3
Deletion	Chr3	18897752	18897754	2	OsKitaake03g227200
Deletion	Chr2	28696001	28707000	10999	2
Deletion	Chr2	29915322	29915323	1
Deletion	Chr4	32666001	32732000	65999	14
Deletion	Chr1	32690884	32690885	1

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr1	7326800	7617094	OsKitaake01g091900
Inversion	Chr1	7326835	7617095	OsKitaake01g091900
Inversion	Chr9	13662681	13665233
Inversion	Chr9	13662710	13665250

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes