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Mutant Information

Mutant Name	FN-406 [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN-406 Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 19

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 13993855 G-A Homo INTERGENIC
SBS Chr1 27548448 T-A Hetero INTERGENIC
SBS Chr1 27548449 G-A Hetero INTERGENIC
SBS Chr1 28267449 G-A Hetero INTERGENIC
SBS Chr2 19223748 C-A Homo INTRON
SBS Chr2 25963974 T-A Homo INTRON
SBS Chr3 2865236 G-T Homo INTERGENIC
SBS Chr3 9556663 C-T Hetero INTERGENIC
SBS Chr3 13909777 G-C Hetero INTERGENIC
SBS Chr3 36055383 T-C Homo INTERGENIC
SBS Chr4 10533388 G-A Hetero SYNONYMOUS_CODING
SBS Chr4 10533389 C-T Hetero NON_SYNONYMOUS_CODING OsKitaake04g055600
SBS Chr5 23979177 A-T Hetero INTERGENIC
SBS Chr6 10510466 C-A Hetero INTERGENIC
SBS Chr6 14479966 A-T Hetero INTERGENIC
SBS Chr6 15808858 A-G Hetero INTERGENIC
SBS Chr9 5792136 T-C Hetero INTERGENIC
SBS Chr11 5091193 G-A Hetero INTERGENIC
SBS Chr11 21137494 A-C Homo INTERGENIC

Deletions: 23

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr7 704969 704970 1
Deletion Chr7 4649935 4649937 2
Deletion Chr6 6880147 6880148 1
Deletion Chr1 11604317 11604335 18
Deletion Chr8 12151023 12151025 2
Deletion Chr3 12734806 12734807 1 OsKitaake03g171700
Deletion Chr3 12737660 12737670 10
Deletion Chr9 13216117 13216121 4
Deletion Chr6 13291596 13291598 2
Deletion Chr5 14083752 14083754 2
Deletion Chr11 15418559 15418572 13
Deletion Chr4 17444861 17444864 3
Deletion Chr5 17550115 17550117 2
Deletion Chr5 17639654 17639667 13
Deletion Chr11 17933603 17933670 67
Deletion Chr12 18357941 18358109 168
Deletion Chr6 20098250 20098317 67
Deletion Chr3 24880999 24881001 2
Deletion Chr8 28917013 28917020 7
Deletion Chr4 33876812 33876814 2
Deletion Chr1 35763581 35763583 2 OsKitaake01g378700
Deletion Chr1 41133506 41133514 8
Deletion Chr1 43767852 43767872 20

Insertions: 2

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr7 1254156 1254159 2
Insertion Chr8 20638701 20638704 2

Translocations: 1

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr2 25963793 Chr1 17252844 OsKitaake02g256400

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	13993855	G-A	Homo	INTERGENIC
SBS	Chr1	27548448	T-A	Hetero	INTERGENIC
SBS	Chr1	27548449	G-A	Hetero	INTERGENIC
SBS	Chr1	28267449	G-A	Hetero	INTERGENIC
SBS	Chr2	19223748	C-A	Homo	INTRON
SBS	Chr2	25963974	T-A	Homo	INTRON
SBS	Chr3	2865236	G-T	Homo	INTERGENIC
SBS	Chr3	9556663	C-T	Hetero	INTERGENIC
SBS	Chr3	13909777	G-C	Hetero	INTERGENIC
SBS	Chr3	36055383	T-C	Homo	INTERGENIC
SBS	Chr4	10533388	G-A	Hetero	SYNONYMOUS_CODING
SBS	Chr4	10533389	C-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake04g055600
SBS	Chr5	23979177	A-T	Hetero	INTERGENIC
SBS	Chr6	10510466	C-A	Hetero	INTERGENIC
SBS	Chr6	14479966	A-T	Hetero	INTERGENIC
SBS	Chr6	15808858	A-G	Hetero	INTERGENIC
SBS	Chr9	5792136	T-C	Hetero	INTERGENIC
SBS	Chr11	5091193	G-A	Hetero	INTERGENIC
SBS	Chr11	21137494	A-C	Homo	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr7	704969	704970	1
Deletion	Chr7	4649935	4649937	2
Deletion	Chr6	6880147	6880148	1
Deletion	Chr1	11604317	11604335	18
Deletion	Chr8	12151023	12151025	2
Deletion	Chr3	12734806	12734807	1	OsKitaake03g171700
Deletion	Chr3	12737660	12737670	10
Deletion	Chr9	13216117	13216121	4
Deletion	Chr6	13291596	13291598	2
Deletion	Chr5	14083752	14083754	2
Deletion	Chr11	15418559	15418572	13
Deletion	Chr4	17444861	17444864	3
Deletion	Chr5	17550115	17550117	2
Deletion	Chr5	17639654	17639667	13
Deletion	Chr11	17933603	17933670	67
Deletion	Chr12	18357941	18358109	168
Deletion	Chr6	20098250	20098317	67
Deletion	Chr3	24880999	24881001	2
Deletion	Chr8	28917013	28917020	7
Deletion	Chr4	33876812	33876814	2
Deletion	Chr1	35763581	35763583	2	OsKitaake01g378700
Deletion	Chr1	41133506	41133514	8
Deletion	Chr1	43767852	43767872	20

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr2	25963793	Chr1	17252844	OsKitaake02g256400

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes