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Mutant Information

Mutant Name	FN-407 [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN-407 Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 32

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 5387444 G-A Hetero INTRON
SBS Chr1 10079134 T-C Hetero INTRON
SBS Chr1 13686336 T-C Homo INTERGENIC
SBS Chr1 21943671 T-C Homo INTERGENIC
SBS Chr2 1887576 G-T Hetero NON_SYNONYMOUS_CODING OsKitaake02g028900
SBS Chr2 19792883 C-T Hetero INTERGENIC
SBS Chr2 31609551 T-C Homo INTERGENIC
SBS Chr2 32513301 C-T Hetero INTERGENIC
SBS Chr2 35704850 A-G Hetero SPLICE_SITE_ACCEPTOR OsKitaake02g375400
SBS Chr3 1835116 A-T Hetero INTERGENIC
SBS Chr3 8273103 T-C Hetero UTR_3_PRIME
SBS Chr4 589028 C-G Hetero INTERGENIC
SBS Chr4 10822711 G-A Hetero INTERGENIC
SBS Chr6 11564966 C-T Homo INTERGENIC
SBS Chr6 13386980 G-A Hetero INTERGENIC
SBS Chr6 20738757 C-T Hetero INTERGENIC
SBS Chr6 22260124 G-A Homo INTRON
SBS Chr6 24205135 T-A Homo INTERGENIC
SBS Chr7 4905030 T-A Hetero INTERGENIC
SBS Chr7 8344003 G-A Homo INTERGENIC
SBS Chr7 13461209 C-A Homo INTERGENIC
SBS Chr7 17291762 T-A Homo INTERGENIC
SBS Chr8 215310 C-T Homo INTRON
SBS Chr8 19284379 G-A Homo INTERGENIC
SBS Chr10 4132447 A-C Hetero UTR_3_PRIME
SBS Chr10 4375186 T-G Hetero INTERGENIC
SBS Chr11 6138077 G-T Homo SYNONYMOUS_CODING
SBS Chr11 12612500 T-G Hetero INTERGENIC
SBS Chr11 29430798 A-G Homo INTERGENIC
SBS Chr12 14593812 A-T Hetero INTERGENIC
SBS Chr12 14888590 C-G Hetero INTERGENIC
SBS Chr12 26016345 A-T Homo INTERGENIC

Deletions: 16

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr8 205062 205078 16
Deletion Chr7 333710 333712 2 OsKitaake07g002800
Deletion Chr1 526568 526580 12
Deletion Chr1 1483299 1483344 45
Deletion Chr10 2827001 2939000 111999 10
Deletion Chr4 3116001 3124000 7999
Deletion Chr9 4285586 4285600 14
Deletion Chr9 5071222 5071227 5
Deletion Chr5 7147563 7147564 1
Deletion Chr7 15637595 15637600 5
Deletion Chr9 18398070 18398083 13 OsKitaake09g143900
Deletion Chr10 18792001 18861000 68999 3
Deletion Chr6 22260102 22260113 11
Deletion Chr6 28353043 28353164 121
Deletion Chr3 30174035 30174038 3
Deletion Chr4 36960644 36961078 434

Insertions: 2

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr4 2728023 2728026 2
Insertion Chr8 22823116 22823118 1

Translocations: 2

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr10 4035301 Chr1 15315552
Translocation Chr10 4047278 Chr1 15315566

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	5387444	G-A	Hetero	INTRON
SBS	Chr1	10079134	T-C	Hetero	INTRON
SBS	Chr1	13686336	T-C	Homo	INTERGENIC
SBS	Chr1	21943671	T-C	Homo	INTERGENIC
SBS	Chr2	1887576	G-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake02g028900
SBS	Chr2	19792883	C-T	Hetero	INTERGENIC
SBS	Chr2	31609551	T-C	Homo	INTERGENIC
SBS	Chr2	32513301	C-T	Hetero	INTERGENIC
SBS	Chr2	35704850	A-G	Hetero	SPLICE_SITE_ACCEPTOR	OsKitaake02g375400
SBS	Chr3	1835116	A-T	Hetero	INTERGENIC
SBS	Chr3	8273103	T-C	Hetero	UTR_3_PRIME
SBS	Chr4	589028	C-G	Hetero	INTERGENIC
SBS	Chr4	10822711	G-A	Hetero	INTERGENIC
SBS	Chr6	11564966	C-T	Homo	INTERGENIC
SBS	Chr6	13386980	G-A	Hetero	INTERGENIC
SBS	Chr6	20738757	C-T	Hetero	INTERGENIC
SBS	Chr6	22260124	G-A	Homo	INTRON
SBS	Chr6	24205135	T-A	Homo	INTERGENIC
SBS	Chr7	4905030	T-A	Hetero	INTERGENIC
SBS	Chr7	8344003	G-A	Homo	INTERGENIC
SBS	Chr7	13461209	C-A	Homo	INTERGENIC
SBS	Chr7	17291762	T-A	Homo	INTERGENIC
SBS	Chr8	215310	C-T	Homo	INTRON
SBS	Chr8	19284379	G-A	Homo	INTERGENIC
SBS	Chr10	4132447	A-C	Hetero	UTR_3_PRIME
SBS	Chr10	4375186	T-G	Hetero	INTERGENIC
SBS	Chr11	6138077	G-T	Homo	SYNONYMOUS_CODING
SBS	Chr11	12612500	T-G	Hetero	INTERGENIC
SBS	Chr11	29430798	A-G	Homo	INTERGENIC
SBS	Chr12	14593812	A-T	Hetero	INTERGENIC
SBS	Chr12	14888590	C-G	Hetero	INTERGENIC
SBS	Chr12	26016345	A-T	Homo	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr8	205062	205078	16
Deletion	Chr7	333710	333712	2	OsKitaake07g002800
Deletion	Chr1	526568	526580	12
Deletion	Chr1	1483299	1483344	45
Deletion	Chr10	2827001	2939000	111999	10
Deletion	Chr4	3116001	3124000	7999
Deletion	Chr9	4285586	4285600	14
Deletion	Chr9	5071222	5071227	5
Deletion	Chr5	7147563	7147564	1
Deletion	Chr7	15637595	15637600	5
Deletion	Chr9	18398070	18398083	13	OsKitaake09g143900
Deletion	Chr10	18792001	18861000	68999	3
Deletion	Chr6	22260102	22260113	11
Deletion	Chr6	28353043	28353164	121
Deletion	Chr3	30174035	30174038	3
Deletion	Chr4	36960644	36961078	434

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr10	4035301	Chr1	15315552
Translocation	Chr10	4047278	Chr1	15315566

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes