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Mutant Information

Mutant Name	FN-408 [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN-408 Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 36

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 1913666 A-T Homo NON_SYNONYMOUS_CODING OsKitaake01g023100
SBS Chr1 2071318 C-T Homo INTRON
SBS Chr1 2602329 C-T Homo INTRON
SBS Chr1 11588867 C-A Hetero INTERGENIC
SBS Chr1 16290900 C-A Hetero INTERGENIC
SBS Chr1 37827996 A-T Hetero INTERGENIC
SBS Chr2 415062 A-G Hetero INTERGENIC
SBS Chr2 1544307 C-A Hetero INTRON
SBS Chr2 3409876 A-C Homo NON_SYNONYMOUS_CODING OsKitaake02g049400
SBS Chr2 3409879 G-C Homo SYNONYMOUS_CODING
SBS Chr2 3409882 G-T Homo SYNONYMOUS_CODING
SBS Chr2 8333179 T-A Hetero INTERGENIC
SBS Chr2 28945720 A-C Hetero INTERGENIC
SBS Chr2 31035276 T-A Hetero INTERGENIC
SBS Chr3 5021801 G-A Hetero INTERGENIC
SBS Chr3 9192209 C-A Hetero NON_SYNONYMOUS_CODING OsKitaake03g125600
SBS Chr3 9192210 T-A Hetero NON_SYNONYMOUS_CODING OsKitaake03g125600
SBS Chr3 34880489 A-T Hetero INTERGENIC
SBS Chr4 13468886 G-T Hetero INTERGENIC
SBS Chr4 20051216 T-A Homo INTRON
SBS Chr5 15017759 T-A Hetero INTERGENIC
SBS Chr6 14973135 A-T Homo INTERGENIC
SBS Chr6 29510267 A-G Homo UTR_3_PRIME
SBS Chr6 29513835 A-G Homo INTRON
SBS Chr6 29513837 A-T Homo INTRON
SBS Chr7 2176055 G-A Hetero INTERGENIC
SBS Chr7 2521422 G-T Hetero UTR_5_PRIME
SBS Chr7 15776925 C-T Hetero INTERGENIC
SBS Chr8 20517450 G-T Hetero INTERGENIC
SBS Chr8 20517451 T-G Hetero INTERGENIC
SBS Chr8 24956211 G-C Hetero INTERGENIC
SBS Chr9 7502972 G-A Homo INTERGENIC
SBS Chr11 28285843 C-A Homo INTERGENIC
SBS Chr12 7584653 G-A Homo INTERGENIC
SBS Chr12 13565944 T-C Homo INTERGENIC
SBS Chr12 24971600 G-C Homo INTRON

Deletions: 17

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr11 23663 23667 4
Deletion Chr6 135627 135628 1
Deletion Chr10 659905 659909 4
Deletion Chr5 1045761 1045770 9 OsKitaake05g012800
Deletion Chr1 1115771 1115775 4 OsKitaake01g013100
Deletion Chr7 2497121 2497129 8 OsKitaake07g033400
Deletion Chr9 2889127 2889128 1
Deletion Chr12 4939519 4939520 1
Deletion Chr5 7018598 7018599 1
Deletion Chr8 12630033 12630034 1
Deletion Chr7 12991964 12992031 67
Deletion Chr2 14217826 14217828 2
Deletion Chr4 15960696 15960703 7
Deletion Chr3 25158758 25158759 1
Deletion Chr4 33616773 33616781 8 OsKitaake04g278400
Deletion Chr1 34635188 34635191 3
Deletion Chr3 35702452 35702453 1

Insertions: 1

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr10 14816686 14816689 2

Inversions: 6

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr5 1781156 1920264 OsKitaake05g020701
Inversion Chr5 1781164 1920269 OsKitaake05g020701
Inversion Chr7 13353264 14057010
Inversion Chr7 13353275 14057019
Inversion Chr1 38552772 38757473 2
Inversion Chr1 38552776 38759927 2

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	1913666	A-T	Homo	NON_SYNONYMOUS_CODING	OsKitaake01g023100
SBS	Chr1	2071318	C-T	Homo	INTRON
SBS	Chr1	2602329	C-T	Homo	INTRON
SBS	Chr1	11588867	C-A	Hetero	INTERGENIC
SBS	Chr1	16290900	C-A	Hetero	INTERGENIC
SBS	Chr1	37827996	A-T	Hetero	INTERGENIC
SBS	Chr2	415062	A-G	Hetero	INTERGENIC
SBS	Chr2	1544307	C-A	Hetero	INTRON
SBS	Chr2	3409876	A-C	Homo	NON_SYNONYMOUS_CODING	OsKitaake02g049400
SBS	Chr2	3409879	G-C	Homo	SYNONYMOUS_CODING
SBS	Chr2	3409882	G-T	Homo	SYNONYMOUS_CODING
SBS	Chr2	8333179	T-A	Hetero	INTERGENIC
SBS	Chr2	28945720	A-C	Hetero	INTERGENIC
SBS	Chr2	31035276	T-A	Hetero	INTERGENIC
SBS	Chr3	5021801	G-A	Hetero	INTERGENIC
SBS	Chr3	9192209	C-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake03g125600
SBS	Chr3	9192210	T-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake03g125600
SBS	Chr3	34880489	A-T	Hetero	INTERGENIC
SBS	Chr4	13468886	G-T	Hetero	INTERGENIC
SBS	Chr4	20051216	T-A	Homo	INTRON
SBS	Chr5	15017759	T-A	Hetero	INTERGENIC
SBS	Chr6	14973135	A-T	Homo	INTERGENIC
SBS	Chr6	29510267	A-G	Homo	UTR_3_PRIME
SBS	Chr6	29513835	A-G	Homo	INTRON
SBS	Chr6	29513837	A-T	Homo	INTRON
SBS	Chr7	2176055	G-A	Hetero	INTERGENIC
SBS	Chr7	2521422	G-T	Hetero	UTR_5_PRIME
SBS	Chr7	15776925	C-T	Hetero	INTERGENIC
SBS	Chr8	20517450	G-T	Hetero	INTERGENIC
SBS	Chr8	20517451	T-G	Hetero	INTERGENIC
SBS	Chr8	24956211	G-C	Hetero	INTERGENIC
SBS	Chr9	7502972	G-A	Homo	INTERGENIC
SBS	Chr11	28285843	C-A	Homo	INTERGENIC
SBS	Chr12	7584653	G-A	Homo	INTERGENIC
SBS	Chr12	13565944	T-C	Homo	INTERGENIC
SBS	Chr12	24971600	G-C	Homo	INTRON

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr11	23663	23667	4
Deletion	Chr6	135627	135628	1
Deletion	Chr10	659905	659909	4
Deletion	Chr5	1045761	1045770	9	OsKitaake05g012800
Deletion	Chr1	1115771	1115775	4	OsKitaake01g013100
Deletion	Chr7	2497121	2497129	8	OsKitaake07g033400
Deletion	Chr9	2889127	2889128	1
Deletion	Chr12	4939519	4939520	1
Deletion	Chr5	7018598	7018599	1
Deletion	Chr8	12630033	12630034	1
Deletion	Chr7	12991964	12992031	67
Deletion	Chr2	14217826	14217828	2
Deletion	Chr4	15960696	15960703	7
Deletion	Chr3	25158758	25158759	1
Deletion	Chr4	33616773	33616781	8	OsKitaake04g278400
Deletion	Chr1	34635188	34635191	3
Deletion	Chr3	35702452	35702453	1

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr5	1781156	1920264	OsKitaake05g020701
Inversion	Chr5	1781164	1920269	OsKitaake05g020701
Inversion	Chr7	13353264	14057010
Inversion	Chr7	13353275	14057019
Inversion	Chr1	38552772	38757473	2
Inversion	Chr1	38552776	38759927	2

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes