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Mutant Information

Mutant Name	FN-409 [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN-409 Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 42

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 13991293 T-C Hetero INTERGENIC
SBS Chr1 13991299 A-T Hetero INTERGENIC
SBS Chr1 15809447 C-A Hetero INTRON
SBS Chr1 17470027 A-T Hetero INTRON
SBS Chr1 18741196 G-T Hetero NON_SYNONYMOUS_CODING OsKitaake01g188400
SBS Chr1 31903539 T-C Homo INTERGENIC
SBS Chr2 3542397 A-G Hetero UTR_3_PRIME
SBS Chr2 8426097 A-T Homo INTERGENIC
SBS Chr2 9612934 G-T Homo NON_SYNONYMOUS_CODING OsKitaake02g116900
SBS Chr2 9612936 C-T Homo SYNONYMOUS_CODING
SBS Chr2 12902840 G-T Hetero UTR_3_PRIME
SBS Chr2 31476396 G-T Hetero INTERGENIC
SBS Chr3 19223374 A-G Homo INTERGENIC
SBS Chr3 28199136 G-T Hetero NON_SYNONYMOUS_CODING OsKitaake03g291400
SBS Chr3 29328132 T-C Hetero INTRON
SBS Chr3 30837310 C-T Hetero INTERGENIC
SBS Chr3 31678208 C-T Hetero SYNONYMOUS_CODING
SBS Chr4 2274504 C-T Hetero INTERGENIC
SBS Chr4 6925516 G-A Hetero INTERGENIC
SBS Chr4 22315115 G-A Homo INTERGENIC
SBS Chr4 29574670 C-A Homo INTRON
SBS Chr4 35726857 A-G Hetero INTERGENIC
SBS Chr5 10073486 C-T Hetero INTERGENIC
SBS Chr5 10258765 C-T Hetero INTERGENIC
SBS Chr5 12706015 G-A Hetero INTERGENIC
SBS Chr5 12706016 C-A Hetero INTERGENIC
SBS Chr5 22342904 C-T Hetero INTERGENIC
SBS Chr5 27794953 G-A Hetero INTRON
SBS Chr5 27794955 T-A Hetero INTRON
SBS Chr6 159701 G-C Hetero NON_SYNONYMOUS_CODING OsKitaake06g000301
SBS Chr6 6422736 C-T Hetero INTERGENIC
SBS Chr6 10873178 A-T Homo INTERGENIC
SBS Chr7 7804591 G-A Hetero INTERGENIC
SBS Chr8 5257743 G-A Homo INTERGENIC
SBS Chr8 11836269 C-A Hetero INTERGENIC
SBS Chr8 15853169 C-A Hetero INTERGENIC
SBS Chr9 228214 G-T Hetero INTERGENIC
SBS Chr9 2165473 G-T Hetero INTERGENIC
SBS Chr9 2165474 A-T Hetero INTERGENIC
SBS Chr9 20441882 T-A Hetero INTERGENIC
SBS Chr11 8810922 C-T Hetero INTERGENIC
SBS Chr11 22427485 G-A Homo INTERGENIC

Deletions: 20

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr12 3617299 3617303 4 OsKitaake12g050400
Deletion Chr2 4243088 4243097 9 OsKitaake02g060000
Deletion Chr11 5061625 5061630 5
Deletion Chr8 6549702 6549705 3
Deletion Chr6 7420694 7420695 1
Deletion Chr10 7444001 7488000 43999
Deletion Chr12 7715025 7715035 10
Deletion Chr8 7830216 7830217 1
Deletion Chr8 8288844 8288852 8
Deletion Chr6 10766837 10766840 3
Deletion Chr11 11937032 11937041 9
Deletion Chr1 12728203 12728211 8
Deletion Chr1 13644121 13644122 1
Deletion Chr8 25639492 25639493 1
Deletion Chr6 27726112 27726121 9
Deletion Chr2 30279372 30279378 6
Deletion Chr4 31340302 31340313 11
Deletion Chr1 31903946 31903947 1
Deletion Chr1 34246424 34246449 25
Deletion Chr3 36635588 36635593 5

Insertions: 2

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr6 6079 6081 1
Insertion Chr12 20146354 20146356 1 OsKitaake12g154800

Inversions: 6

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr11 19031912 19216930 OsKitaake11g149000
Inversion Chr11 19031919 19216944 OsKitaake11g149000
Inversion Chr12 22751756 23524069
Inversion Chr12 22751760 23524067
Inversion Chr3 27054392 27059323 OsKitaake03g278800
Inversion Chr3 27054395 27059348 OsKitaake03g278800

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	13991293	T-C	Hetero	INTERGENIC
SBS	Chr1	13991299	A-T	Hetero	INTERGENIC
SBS	Chr1	15809447	C-A	Hetero	INTRON
SBS	Chr1	17470027	A-T	Hetero	INTRON
SBS	Chr1	18741196	G-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake01g188400
SBS	Chr1	31903539	T-C	Homo	INTERGENIC
SBS	Chr2	3542397	A-G	Hetero	UTR_3_PRIME
SBS	Chr2	8426097	A-T	Homo	INTERGENIC
SBS	Chr2	9612934	G-T	Homo	NON_SYNONYMOUS_CODING	OsKitaake02g116900
SBS	Chr2	9612936	C-T	Homo	SYNONYMOUS_CODING
SBS	Chr2	12902840	G-T	Hetero	UTR_3_PRIME
SBS	Chr2	31476396	G-T	Hetero	INTERGENIC
SBS	Chr3	19223374	A-G	Homo	INTERGENIC
SBS	Chr3	28199136	G-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake03g291400
SBS	Chr3	29328132	T-C	Hetero	INTRON
SBS	Chr3	30837310	C-T	Hetero	INTERGENIC
SBS	Chr3	31678208	C-T	Hetero	SYNONYMOUS_CODING
SBS	Chr4	2274504	C-T	Hetero	INTERGENIC
SBS	Chr4	6925516	G-A	Hetero	INTERGENIC
SBS	Chr4	22315115	G-A	Homo	INTERGENIC
SBS	Chr4	29574670	C-A	Homo	INTRON
SBS	Chr4	35726857	A-G	Hetero	INTERGENIC
SBS	Chr5	10073486	C-T	Hetero	INTERGENIC
SBS	Chr5	10258765	C-T	Hetero	INTERGENIC
SBS	Chr5	12706015	G-A	Hetero	INTERGENIC
SBS	Chr5	12706016	C-A	Hetero	INTERGENIC
SBS	Chr5	22342904	C-T	Hetero	INTERGENIC
SBS	Chr5	27794953	G-A	Hetero	INTRON
SBS	Chr5	27794955	T-A	Hetero	INTRON
SBS	Chr6	159701	G-C	Hetero	NON_SYNONYMOUS_CODING	OsKitaake06g000301
SBS	Chr6	6422736	C-T	Hetero	INTERGENIC
SBS	Chr6	10873178	A-T	Homo	INTERGENIC
SBS	Chr7	7804591	G-A	Hetero	INTERGENIC
SBS	Chr8	5257743	G-A	Homo	INTERGENIC
SBS	Chr8	11836269	C-A	Hetero	INTERGENIC
SBS	Chr8	15853169	C-A	Hetero	INTERGENIC
SBS	Chr9	228214	G-T	Hetero	INTERGENIC
SBS	Chr9	2165473	G-T	Hetero	INTERGENIC
SBS	Chr9	2165474	A-T	Hetero	INTERGENIC
SBS	Chr9	20441882	T-A	Hetero	INTERGENIC
SBS	Chr11	8810922	C-T	Hetero	INTERGENIC
SBS	Chr11	22427485	G-A	Homo	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr12	3617299	3617303	4	OsKitaake12g050400
Deletion	Chr2	4243088	4243097	9	OsKitaake02g060000
Deletion	Chr11	5061625	5061630	5
Deletion	Chr8	6549702	6549705	3
Deletion	Chr6	7420694	7420695	1
Deletion	Chr10	7444001	7488000	43999
Deletion	Chr12	7715025	7715035	10
Deletion	Chr8	7830216	7830217	1
Deletion	Chr8	8288844	8288852	8
Deletion	Chr6	10766837	10766840	3
Deletion	Chr11	11937032	11937041	9
Deletion	Chr1	12728203	12728211	8
Deletion	Chr1	13644121	13644122	1
Deletion	Chr8	25639492	25639493	1
Deletion	Chr6	27726112	27726121	9
Deletion	Chr2	30279372	30279378	6
Deletion	Chr4	31340302	31340313	11
Deletion	Chr1	31903946	31903947	1
Deletion	Chr1	34246424	34246449	25
Deletion	Chr3	36635588	36635593	5

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr11	19031912	19216930	OsKitaake11g149000
Inversion	Chr11	19031919	19216944	OsKitaake11g149000
Inversion	Chr12	22751756	23524069
Inversion	Chr12	22751760	23524067
Inversion	Chr3	27054392	27059323	OsKitaake03g278800
Inversion	Chr3	27054395	27059348	OsKitaake03g278800

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes