Search Kitaake

Mutant Information

Mutant Name	FN-41 [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN-41 Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 36

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 634732 T-A Homo INTERGENIC
SBS Chr1 634733 T-A Homo INTERGENIC
SBS Chr1 22063856 G-T Hetero UTR_5_PRIME
SBS Chr2 12965527 G-A Hetero INTERGENIC
SBS Chr2 34758153 G-A Hetero INTERGENIC
SBS Chr2 36596645 G-A Hetero INTRON
SBS Chr3 21233173 C-A Hetero UTR_3_PRIME
SBS Chr3 37775985 G-A Hetero INTERGENIC
SBS Chr4 3505842 C-T Homo INTERGENIC
SBS Chr4 34333525 C-T Hetero INTRON
SBS Chr4 35284995 C-G Hetero INTERGENIC
SBS Chr5 9150888 G-A Hetero INTERGENIC
SBS Chr5 10119072 A-T Hetero INTRON
SBS Chr5 11427267 T-C Hetero INTERGENIC
SBS Chr5 21295977 A-C Hetero INTERGENIC
SBS Chr5 28296770 G-T Homo INTRON
SBS Chr6 11200714 C-T Hetero INTERGENIC
SBS Chr6 21414781 A-T Hetero UTR_3_PRIME
SBS Chr7 17278759 A-T Homo INTERGENIC
SBS Chr7 18381632 G-A Hetero SYNONYMOUS_CODING
SBS Chr7 23173012 T-G Hetero INTRON
SBS Chr8 5725625 T-C Homo SYNONYMOUS_CODING
SBS Chr8 26474979 A-C Hetero INTERGENIC
SBS Chr8 26722450 C-G Hetero INTRON
SBS Chr9 18269643 A-T Hetero INTRON
SBS Chr10 22275911 A-T Homo SYNONYMOUS_CODING
SBS Chr10 22361489 A-T Homo NON_SYNONYMOUS_CODING OsKitaake10g183500
SBS Chr10 22361490 A-C Homo NON_SYNONYMOUS_CODING OsKitaake10g183500
SBS Chr10 23340203 G-A Homo INTERGENIC
SBS Chr11 10815552 C-A Hetero INTERGENIC
SBS Chr11 19670544 A-T Hetero INTERGENIC
SBS Chr11 26280208 C-T Hetero INTERGENIC
SBS Chr12 5100148 T-A Hetero INTRON
SBS Chr12 6866252 A-T Hetero INTERGENIC
SBS Chr12 11057727 T-G Hetero INTERGENIC
SBS Chr12 16259956 T-C Homo INTRON

Deletions: 18

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr6 864856 864857 1 OsKitaake06g008700
Deletion Chr10 3115132 3115133 1
Deletion Chr1 4880919 4881280 361
Deletion Chr11 5532166 5532210 44
Deletion Chr11 6967001 7151000 183999 19
Deletion Chr4 7518001 7580000 61999 OsKitaake04g037966
Deletion Chr4 7590001 8207000 616999 42
Deletion Chr2 8264892 8264893 1 OsKitaake02g105200
Deletion Chr12 10613272 10613281 9
Deletion Chr11 10881349 10881351 2 OsKitaake11g105800
Deletion Chr12 13851664 13851666 2
Deletion Chr7 16758634 16758637 3
Deletion Chr8 17555609 17555610 1
Deletion Chr12 19600589 19600591 2
Deletion Chr5 22262454 22262768 314 OsKitaake05g182000
Deletion Chr3 22938110 22938116 6
Deletion Chr10 23930605 23930606 1 OsKitaake10g206800
Deletion Chr4 30326786 30326787 1

Insertions: 1

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr5 30231639 30231641 1

Inversions: 4

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr5 7177509 7849018 OsKitaake05g072000
Inversion Chr5 7197656 7844058
Inversion Chr11 20329263 20464776 OsKitaake11g160200
Inversion Chr11 20329278 20464784 OsKitaake11g160200

Translocations: 2

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr6 7621749 Chr1 15670585 OsKitaake01g170600
Translocation Chr4 19697993 Chr1 13846307

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	634732	T-A	Homo	INTERGENIC
SBS	Chr1	634733	T-A	Homo	INTERGENIC
SBS	Chr1	22063856	G-T	Hetero	UTR_5_PRIME
SBS	Chr2	12965527	G-A	Hetero	INTERGENIC
SBS	Chr2	34758153	G-A	Hetero	INTERGENIC
SBS	Chr2	36596645	G-A	Hetero	INTRON
SBS	Chr3	21233173	C-A	Hetero	UTR_3_PRIME
SBS	Chr3	37775985	G-A	Hetero	INTERGENIC
SBS	Chr4	3505842	C-T	Homo	INTERGENIC
SBS	Chr4	34333525	C-T	Hetero	INTRON
SBS	Chr4	35284995	C-G	Hetero	INTERGENIC
SBS	Chr5	9150888	G-A	Hetero	INTERGENIC
SBS	Chr5	10119072	A-T	Hetero	INTRON
SBS	Chr5	11427267	T-C	Hetero	INTERGENIC
SBS	Chr5	21295977	A-C	Hetero	INTERGENIC
SBS	Chr5	28296770	G-T	Homo	INTRON
SBS	Chr6	11200714	C-T	Hetero	INTERGENIC
SBS	Chr6	21414781	A-T	Hetero	UTR_3_PRIME
SBS	Chr7	17278759	A-T	Homo	INTERGENIC
SBS	Chr7	18381632	G-A	Hetero	SYNONYMOUS_CODING
SBS	Chr7	23173012	T-G	Hetero	INTRON
SBS	Chr8	5725625	T-C	Homo	SYNONYMOUS_CODING
SBS	Chr8	26474979	A-C	Hetero	INTERGENIC
SBS	Chr8	26722450	C-G	Hetero	INTRON
SBS	Chr9	18269643	A-T	Hetero	INTRON
SBS	Chr10	22275911	A-T	Homo	SYNONYMOUS_CODING
SBS	Chr10	22361489	A-T	Homo	NON_SYNONYMOUS_CODING	OsKitaake10g183500
SBS	Chr10	22361490	A-C	Homo	NON_SYNONYMOUS_CODING	OsKitaake10g183500
SBS	Chr10	23340203	G-A	Homo	INTERGENIC
SBS	Chr11	10815552	C-A	Hetero	INTERGENIC
SBS	Chr11	19670544	A-T	Hetero	INTERGENIC
SBS	Chr11	26280208	C-T	Hetero	INTERGENIC
SBS	Chr12	5100148	T-A	Hetero	INTRON
SBS	Chr12	6866252	A-T	Hetero	INTERGENIC
SBS	Chr12	11057727	T-G	Hetero	INTERGENIC
SBS	Chr12	16259956	T-C	Homo	INTRON

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr6	864856	864857	1	OsKitaake06g008700
Deletion	Chr10	3115132	3115133	1
Deletion	Chr1	4880919	4881280	361
Deletion	Chr11	5532166	5532210	44
Deletion	Chr11	6967001	7151000	183999	19
Deletion	Chr4	7518001	7580000	61999	OsKitaake04g037966
Deletion	Chr4	7590001	8207000	616999	42
Deletion	Chr2	8264892	8264893	1	OsKitaake02g105200
Deletion	Chr12	10613272	10613281	9
Deletion	Chr11	10881349	10881351	2	OsKitaake11g105800
Deletion	Chr12	13851664	13851666	2
Deletion	Chr7	16758634	16758637	3
Deletion	Chr8	17555609	17555610	1
Deletion	Chr12	19600589	19600591	2
Deletion	Chr5	22262454	22262768	314	OsKitaake05g182000
Deletion	Chr3	22938110	22938116	6
Deletion	Chr10	23930605	23930606	1	OsKitaake10g206800
Deletion	Chr4	30326786	30326787	1

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr5	7177509	7849018	OsKitaake05g072000
Inversion	Chr5	7197656	7844058
Inversion	Chr11	20329263	20464776	OsKitaake11g160200
Inversion	Chr11	20329278	20464784	OsKitaake11g160200

Main menu

You are here

Search Kitaake

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes