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Mutant Information

Mutant Name	FN-410 [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN-410 Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 33

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 13685890 A-C Hetero INTERGENIC
SBS Chr1 16678571 A-T Homo NON_SYNONYMOUS_CODING OsKitaake01g177400
SBS Chr1 23186697 T-C Hetero UTR_5_PRIME
SBS Chr1 36496675 C-T Hetero INTRON
SBS Chr1 43469013 C-T Hetero INTRON
SBS Chr2 9232704 C-T Hetero INTERGENIC
SBS Chr2 15316930 G-A Hetero NON_SYNONYMOUS_CODING OsKitaake02g159700
SBS Chr2 19337579 C-A Hetero INTERGENIC
SBS Chr2 27527991 C-T Hetero INTERGENIC
SBS Chr2 33332414 G-A Hetero INTERGENIC
SBS Chr3 18268213 C-T Hetero NON_SYNONYMOUS_CODING OsKitaake03g222700
SBS Chr3 32211142 G-T Hetero INTERGENIC
SBS Chr4 2913017 T-C Hetero INTERGENIC
SBS Chr4 24630000 A-G Hetero UTR_5_PRIME
SBS Chr5 14651648 G-A Hetero INTRON
SBS Chr5 22316425 A-G Hetero INTERGENIC
SBS Chr6 12444845 A-T Hetero INTERGENIC
SBS Chr6 14664944 C-A Hetero INTERGENIC
SBS Chr7 7174965 C-T Homo INTERGENIC
SBS Chr7 19988123 C-T Hetero INTERGENIC
SBS Chr7 22581353 G-T Hetero INTERGENIC
SBS Chr8 17831625 A-G Hetero INTRON
SBS Chr8 25699584 G-A Hetero INTERGENIC
SBS Chr9 1779626 T-C Hetero INTRON
SBS Chr9 6676523 C-T Hetero START_GAINED
SBS Chr10 15651256 G-T Hetero INTERGENIC
SBS Chr10 20701936 A-T Homo INTERGENIC
SBS Chr11 6996830 G-A Homo NON_SYNONYMOUS_CODING OsKitaake11g080240
SBS Chr11 12275032 T-G Homo INTRON
SBS Chr11 15168032 G-A Hetero UTR_5_PRIME
SBS Chr11 23182005 G-A Homo INTERGENIC
SBS Chr12 517726 G-C Homo INTERGENIC
SBS Chr12 9140976 T-C Hetero INTERGENIC

Deletions: 17

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr4 3600001 3659000 58999 2
Deletion Chr9 3890413 3890427 14
Deletion Chr7 4301590 4301591 1 OsKitaake07g054000
Deletion Chr5 6645542 6645544 2
Deletion Chr3 12750551 12750554 3
Deletion Chr2 12761080 12761090 10
Deletion Chr9 14128837 14128847 10
Deletion Chr7 14313463 14313469 6
Deletion Chr11 15275903 15275915 12
Deletion Chr7 20677837 20677850 13
Deletion Chr8 22006653 22006654 1
Deletion Chr5 24639209 24639218 9
Deletion Chr8 24896164 24896179 15
Deletion Chr2 27764439 27764441 2
Deletion Chr3 30163453 30163466 13
Deletion Chr2 32990513 32990519 6
Deletion Chr1 33285823 33285827 4

Insertions: 2

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr11 1940349 1940353 3
Insertion Chr10 23539482 23539487 4

Inversions: 4

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr4 2196097 3008274
Inversion Chr4 3008072 3658849 OsKitaake04g017900
Inversion Chr7 4460515 5160704 2
Inversion Chr7 4460599 5160756 2

Translocations: 5

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr4 2195055 Chr2 32061098
Translocation Chr8 3307800 Chr3 5849634 OsKitaake03g083000
Translocation Chr8 3307874 Chr3 5849161 OsKitaake03g083000
Translocation Chr6 25862612 Chr3 7487626 OsKitaake06g230200
Translocation Chr6 25866852 Chr3 7487617 OsKitaake06g230300

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	13685890	A-C	Hetero	INTERGENIC
SBS	Chr1	16678571	A-T	Homo	NON_SYNONYMOUS_CODING	OsKitaake01g177400
SBS	Chr1	23186697	T-C	Hetero	UTR_5_PRIME
SBS	Chr1	36496675	C-T	Hetero	INTRON
SBS	Chr1	43469013	C-T	Hetero	INTRON
SBS	Chr2	9232704	C-T	Hetero	INTERGENIC
SBS	Chr2	15316930	G-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake02g159700
SBS	Chr2	19337579	C-A	Hetero	INTERGENIC
SBS	Chr2	27527991	C-T	Hetero	INTERGENIC
SBS	Chr2	33332414	G-A	Hetero	INTERGENIC
SBS	Chr3	18268213	C-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake03g222700
SBS	Chr3	32211142	G-T	Hetero	INTERGENIC
SBS	Chr4	2913017	T-C	Hetero	INTERGENIC
SBS	Chr4	24630000	A-G	Hetero	UTR_5_PRIME
SBS	Chr5	14651648	G-A	Hetero	INTRON
SBS	Chr5	22316425	A-G	Hetero	INTERGENIC
SBS	Chr6	12444845	A-T	Hetero	INTERGENIC
SBS	Chr6	14664944	C-A	Hetero	INTERGENIC
SBS	Chr7	7174965	C-T	Homo	INTERGENIC
SBS	Chr7	19988123	C-T	Hetero	INTERGENIC
SBS	Chr7	22581353	G-T	Hetero	INTERGENIC
SBS	Chr8	17831625	A-G	Hetero	INTRON
SBS	Chr8	25699584	G-A	Hetero	INTERGENIC
SBS	Chr9	1779626	T-C	Hetero	INTRON
SBS	Chr9	6676523	C-T	Hetero	START_GAINED
SBS	Chr10	15651256	G-T	Hetero	INTERGENIC
SBS	Chr10	20701936	A-T	Homo	INTERGENIC
SBS	Chr11	6996830	G-A	Homo	NON_SYNONYMOUS_CODING	OsKitaake11g080240
SBS	Chr11	12275032	T-G	Homo	INTRON
SBS	Chr11	15168032	G-A	Hetero	UTR_5_PRIME
SBS	Chr11	23182005	G-A	Homo	INTERGENIC
SBS	Chr12	517726	G-C	Homo	INTERGENIC
SBS	Chr12	9140976	T-C	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr4	3600001	3659000	58999	2
Deletion	Chr9	3890413	3890427	14
Deletion	Chr7	4301590	4301591	1	OsKitaake07g054000
Deletion	Chr5	6645542	6645544	2
Deletion	Chr3	12750551	12750554	3
Deletion	Chr2	12761080	12761090	10
Deletion	Chr9	14128837	14128847	10
Deletion	Chr7	14313463	14313469	6
Deletion	Chr11	15275903	15275915	12
Deletion	Chr7	20677837	20677850	13
Deletion	Chr8	22006653	22006654	1
Deletion	Chr5	24639209	24639218	9
Deletion	Chr8	24896164	24896179	15
Deletion	Chr2	27764439	27764441	2
Deletion	Chr3	30163453	30163466	13
Deletion	Chr2	32990513	32990519	6
Deletion	Chr1	33285823	33285827	4

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr4	2196097	3008274
Inversion	Chr4	3008072	3658849	OsKitaake04g017900
Inversion	Chr7	4460515	5160704	2
Inversion	Chr7	4460599	5160756	2

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes