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| Mutant Information |
|---|
| Mutant Name | FN-411 [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN-411 Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 35
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 12626440 | A-G | Hetero | INTERGENIC | |
| SBS | Chr1 | 26133621 | G-A | Hetero | INTRON | |
| SBS | Chr1 | 31977667 | C-A | Hetero | INTERGENIC | |
| SBS | Chr1 | 33573106 | T-C | Hetero | INTERGENIC | |
| SBS | Chr1 | 40483752 | A-G | Hetero | INTERGENIC | |
| SBS | Chr2 | 30074371 | T-C | Hetero | INTERGENIC | |
| SBS | Chr3 | 19368581 | T-C | Homo | INTERGENIC | |
| SBS | Chr3 | 20448335 | G-A | Homo | INTERGENIC | |
| SBS | Chr3 | 29573952 | C-T | Hetero | NON_SYNONYMOUS_CODING | OsKitaake03g308300 |
| SBS | Chr4 | 6127581 | G-A | Hetero | INTERGENIC | |
| SBS | Chr4 | 8748257 | G-A | Hetero | INTERGENIC | |
| SBS | Chr4 | 14716936 | C-T | Hetero | INTERGENIC | |
| SBS | Chr4 | 28273192 | G-A | Homo | INTERGENIC | |
| SBS | Chr4 | 36951223 | G-A | Hetero | NON_SYNONYMOUS_CODING | OsKitaake04g323500 |
| SBS | Chr5 | 9313486 | A-T | Hetero | INTERGENIC | |
| SBS | Chr5 | 10455674 | G-T | Hetero | INTERGENIC | |
| SBS | Chr6 | 6501081 | G-T | Hetero | INTERGENIC | |
| SBS | Chr6 | 26419008 | A-T | Homo | INTRON | |
| SBS | Chr7 | 1812918 | T-C | Hetero | INTERGENIC | |
| SBS | Chr7 | 13562115 | C-T | Homo | INTERGENIC | |
| SBS | Chr7 | 21298449 | G-A | Hetero | INTERGENIC | |
| SBS | Chr7 | 23276022 | A-G | Hetero | INTRON | |
| SBS | Chr7 | 24841714 | T-A | Hetero | INTERGENIC | |
| SBS | Chr7 | 25187018 | G-A | Hetero | INTERGENIC | |
| SBS | Chr9 | 3992437 | T-A | Hetero | INTERGENIC | |
| SBS | Chr9 | 13122291 | C-T | Homo | INTERGENIC | |
| SBS | Chr9 | 15535070 | A-G | Homo | INTERGENIC | |
| SBS | Chr10 | 650005 | G-A | Homo | INTERGENIC | |
| SBS | Chr11 | 7061694 | G-C | Homo | INTERGENIC | |
| SBS | Chr11 | 11089068 | G-A | Homo | INTERGENIC | |
| SBS | Chr11 | 18542276 | T-C | Homo | INTERGENIC | |
| SBS | Chr11 | 18542277 | A-T | Homo | INTERGENIC | |
| SBS | Chr11 | 21799236 | C-T | Homo | INTERGENIC | |
| SBS | Chr12 | 15062453 | A-G | Homo | INTERGENIC | |
| SBS | Chr12 | 22049822 | A-T | Hetero | INTERGENIC |
Deletions: 14
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr10 | 262561 | 262574 | 13 | |
| Deletion | Chr5 | 2173437 | 2173453 | 16 | |
| Deletion | Chr7 | 3075334 | 3075336 | 2 | OsKitaake07g038600 |
| Deletion | Chr10 | 4044132 | 4044134 | 2 | |
| Deletion | Chr7 | 7968852 | 7968853 | 1 | |
| Deletion | Chr1 | 8357263 | 8357264 | 1 | |
| Deletion | Chr9 | 14074767 | 14074768 | 1 | OsKitaake09g094200 |
| Deletion | Chr7 | 14554396 | 14554597 | 201 | |
| Deletion | Chr1 | 16820001 | 16989000 | 168999 | 7 |
| Deletion | Chr5 | 17229074 | 17229475 | 401 | |
| Deletion | Chr6 | 22074913 | 22074914 | 1 | |
| Deletion | Chr8 | 24391001 | 24503000 | 111999 | 14 |
| Deletion | Chr3 | 32601561 | 32601565 | 4 | |
| Deletion | Chr1 | 38316938 | 38316939 | 1 | OsKitaake01g408400 |
Insertions: 1
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Insertion | Chr4 | 21437457 | 21437463 | 5 |