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| Mutant Information |
|---|
| Mutant Name | FN-412 [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN-412 Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 26
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 4429328 | T-A | Hetero | INTERGENIC | |
| SBS | Chr1 | 7270532 | G-T | Hetero | INTERGENIC | |
| SBS | Chr1 | 25610025 | C-T | Hetero | INTERGENIC | |
| SBS | Chr1 | 36543726 | C-T | Hetero | INTERGENIC | |
| SBS | Chr2 | 24150824 | G-A | Hetero | INTERGENIC | |
| SBS | Chr3 | 4892098 | A-T | Hetero | INTRON | |
| SBS | Chr3 | 19289471 | C-T | Hetero | INTERGENIC | |
| SBS | Chr3 | 31145641 | T-A | Hetero | INTERGENIC | |
| SBS | Chr4 | 10051870 | A-T | Homo | NON_SYNONYMOUS_CODING | OsKitaake04g053900 |
| SBS | Chr4 | 10304055 | A-G | Homo | INTERGENIC | |
| SBS | Chr4 | 27089267 | C-T | Homo | INTERGENIC | |
| SBS | Chr5 | 12135339 | G-A | Hetero | INTERGENIC | |
| SBS | Chr5 | 14397266 | C-A | Hetero | INTERGENIC | |
| SBS | Chr6 | 3903792 | A-T | Hetero | INTRON | |
| SBS | Chr7 | 17201004 | C-A | Hetero | INTERGENIC | |
| SBS | Chr7 | 21365422 | T-A | Homo | INTERGENIC | |
| SBS | Chr8 | 3962952 | T-A | Homo | INTRON | |
| SBS | Chr8 | 20388481 | C-T | Hetero | INTERGENIC | |
| SBS | Chr8 | 21281158 | A-G | Hetero | INTERGENIC | |
| SBS | Chr8 | 23399250 | A-G | Hetero | INTERGENIC | |
| SBS | Chr8 | 24955767 | G-T | Hetero | INTERGENIC | |
| SBS | Chr9 | 3336021 | G-T | Hetero | INTERGENIC | |
| SBS | Chr9 | 9897950 | G-T | Hetero | INTERGENIC | |
| SBS | Chr11 | 1570359 | T-A | Hetero | INTRON | |
| SBS | Chr11 | 28776152 | A-G | Hetero | INTERGENIC | |
| SBS | Chr12 | 12706520 | T-G | Hetero | INTERGENIC |
Deletions: 15
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr11 | 2085955 | 2085963 | 8 | |
| Deletion | Chr4 | 5445214 | 5445217 | 3 | |
| Deletion | Chr9 | 5445955 | 5446045 | 90 | |
| Deletion | Chr4 | 5688170 | 5688174 | 4 | |
| Deletion | Chr6 | 6083793 | 6083797 | 4 | |
| Deletion | Chr10 | 6721001 | 6800000 | 78999 | 3 |
| Deletion | Chr4 | 9991637 | 9991643 | 6 | |
| Deletion | Chr4 | 10248875 | 10248876 | 1 | |
| Deletion | Chr4 | 13747169 | 13747170 | 1 | |
| Deletion | Chr7 | 16381069 | 16381159 | 90 | |
| Deletion | Chr4 | 17002982 | 17002989 | 7 | |
| Deletion | Chr2 | 19302356 | 19302359 | 3 | |
| Deletion | Chr8 | 21256772 | 21256773 | 1 | |
| Deletion | Chr12 | 25091681 | 25091682 | 1 | OsKitaake12g203400 |
| Deletion | Chr2 | 26539847 | 26539848 | 1 | OsKitaake02g265300 |
Insertions: 6
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Insertion | Chr4 | 20526403 | 20526407 | 3 | |
| Insertion | Chr10 | 2385049 | 2385057 | 7 | |
| Insertion | Chr10 | 3055986 | 3055989 | 2 | |
| Insertion | Chr1 | 25385548 | 25385551 | 2 | |
| Insertion | Chr3 | 20043018 | 20043020 | 1 | |
| Insertion | Chr6 | 6487874 | 6487917 | 42 | OsKitaake06g084600  |
Translocations: 1
Variant Type |
Chromosome |
Position 1 |
Chromosome |
Position 2 |
Number of Genes |
| Translocation | Chr3 | 22623875 | Chr1 | 39798640 | 2 |