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| Mutant Information |
|---|
| Mutant Name | FN-42 [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN-42 Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 29
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 10558381 | C-T | Homo | INTERGENIC | |
| SBS | Chr1 | 39272982 | C-T | Homo | INTRON | |
| SBS | Chr1 | 39272983 | C-T | Homo | INTRON | |
| SBS | Chr2 | 4673257 | G-A | Hetero | UTR_3_PRIME | |
| SBS | Chr2 | 21482386 | G-C | Hetero | INTERGENIC | |
| SBS | Chr2 | 24041903 | G-A | Hetero | UTR_3_PRIME | |
| SBS | Chr3 | 7119275 | G-A | Hetero | INTERGENIC | |
| SBS | Chr3 | 12017004 | G-T | Homo | UTR_3_PRIME | |
| SBS | Chr3 | 19225004 | C-G | Hetero | INTERGENIC | |
| SBS | Chr3 | 30206148 | G-A | Hetero | INTERGENIC | |
| SBS | Chr4 | 35316752 | A-C | Hetero | INTERGENIC | |
| SBS | Chr5 | 17503570 | C-T | Homo | INTERGENIC | |
| SBS | Chr5 | 17503571 | C-T | Homo | INTERGENIC | |
| SBS | Chr5 | 17503583 | A-T | Homo | INTERGENIC | |
| SBS | Chr5 | 18046794 | T-C | Homo | UTR_3_PRIME | |
| SBS | Chr5 | 26037817 | T-A | Hetero | INTERGENIC | |
| SBS | Chr6 | 14034507 | G-A | Homo | INTERGENIC | |
| SBS | Chr7 | 7174965 | C-T | Homo | INTERGENIC | |
| SBS | Chr7 | 7735655 | G-A | Homo | INTRON | |
| SBS | Chr7 | 11686512 | A-G | Homo | INTERGENIC | |
| SBS | Chr7 | 26879075 | A-G | Homo | INTRON | |
| SBS | Chr8 | 24997294 | G-T | Hetero | INTERGENIC | |
| SBS | Chr9 | 8176718 | T-C | Hetero | INTERGENIC | |
| SBS | Chr9 | 9722996 | T-C | Hetero | INTERGENIC | |
| SBS | Chr11 | 2097419 | G-A | Hetero | UTR_3_PRIME | |
| SBS | Chr11 | 8445184 | G-T | Homo | INTRON | |
| SBS | Chr12 | 340656 | G-C | Hetero | INTRON | |
| SBS | Chr12 | 23755369 | G-A | Hetero | INTRON | |
| SBS | Chr12 | 25041991 | C-G | Hetero | UTR_3_PRIME |
Deletions: 8
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr7 | 6406813 | 6406814 | 1 | |
| Deletion | Chr4 | 14135173 | 14135175 | 2 | |
| Deletion | Chr8 | 14999105 | 14999109 | 4 | |
| Deletion | Chr1 | 16950063 | 16950065 | 2 | |
| Deletion | Chr11 | 21900334 | 21900337 | 3 | OsKitaake11g173300 |
| Deletion | Chr7 | 23559341 | 23559343 | 2 | OsKitaake07g206400 |
| Deletion | Chr7 | 26416036 | 26416046 | 10 | |
| Deletion | Chr12 | 26958260 | 26958265 | 5 |
Insertions: 3
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Insertion | Chr7 | 10004433 | 10004436 | 2 | |
| Insertion | Chr11 | 12530004 | 12530006 | 1 | |
| Insertion | Chr12 | 14489846 | 14489848 | 1 |
Inversions: 2
Variant Type |
Chromosome |
Position 1 |
Position 2 |
Number of Genes |
| Inversion | Chr7 | 23157365 | 23631155 | 2 |
| Inversion | Chr7 | 23157384 | 23631327 | 2 |
Translocations: 1
Variant Type |
Chromosome |
Position 1 |
Chromosome |
Position 2 |
Number of Genes |
| Translocation | Chr11 | 26778851 | Chr10 | 1085757 |