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Mutant Information

Mutant Name	FN-43 [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN-43 Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 17

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 16704003 T-G Hetero INTERGENIC
SBS Chr1 22095298 C-T Hetero INTERGENIC
SBS Chr1 39116849 G-A Hetero INTERGENIC
SBS Chr1 42562111 G-T Hetero INTERGENIC
SBS Chr2 11708716 T-A Hetero INTERGENIC
SBS Chr2 36097364 A-T Hetero INTERGENIC
SBS Chr2 36279172 T-G Hetero INTERGENIC
SBS Chr5 4004560 C-A Homo INTERGENIC
SBS Chr5 4004561 A-T Homo INTERGENIC
SBS Chr7 235946 C-T Hetero INTERGENIC
SBS Chr7 841480 G-A Hetero INTERGENIC
SBS Chr7 6504771 A-T Hetero INTERGENIC
SBS Chr7 15899779 C-A Hetero INTERGENIC
SBS Chr9 17599319 C-T Hetero NON_SYNONYMOUS_CODING OsKitaake09g133000
SBS Chr11 13686697 A-T Hetero INTRON
SBS Chr12 9302872 G-A Homo INTERGENIC
SBS Chr12 10272983 A-G Homo INTERGENIC

Deletions: 16

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr6 17544 17546 2
Deletion Chr3 409104 409106 2
Deletion Chr8 3947406 3947407 1
Deletion Chr5 4004255 4004257 2
Deletion Chr12 4190103 4190105 2
Deletion Chr6 7549896 7549947 51
Deletion Chr4 9480408 9480580 172
Deletion Chr4 11011298 11011309 11
Deletion Chr8 12845098 12845099 1
Deletion Chr7 16381069 16381159 90
Deletion Chr11 20885374 20885456 82
Deletion Chr1 25037097 25037098 1 OsKitaake01g242300
Deletion Chr5 26328017 26328019 2 OsKitaake05g232500
Deletion Chr5 27767776 27767783 7
Deletion Chr3 30383525 30383527 2
Deletion Chr3 34671508 34671510 2

Insertions: 4

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr1 17222099 17222101 1
Insertion Chr1 19517592 19517594 1
Insertion Chr2 9425865 9425867 1
Insertion Chr5 9944344 9944346 1

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	16704003	T-G	Hetero	INTERGENIC
SBS	Chr1	22095298	C-T	Hetero	INTERGENIC
SBS	Chr1	39116849	G-A	Hetero	INTERGENIC
SBS	Chr1	42562111	G-T	Hetero	INTERGENIC
SBS	Chr2	11708716	T-A	Hetero	INTERGENIC
SBS	Chr2	36097364	A-T	Hetero	INTERGENIC
SBS	Chr2	36279172	T-G	Hetero	INTERGENIC
SBS	Chr5	4004560	C-A	Homo	INTERGENIC
SBS	Chr5	4004561	A-T	Homo	INTERGENIC
SBS	Chr7	235946	C-T	Hetero	INTERGENIC
SBS	Chr7	841480	G-A	Hetero	INTERGENIC
SBS	Chr7	6504771	A-T	Hetero	INTERGENIC
SBS	Chr7	15899779	C-A	Hetero	INTERGENIC
SBS	Chr9	17599319	C-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake09g133000
SBS	Chr11	13686697	A-T	Hetero	INTRON
SBS	Chr12	9302872	G-A	Homo	INTERGENIC
SBS	Chr12	10272983	A-G	Homo	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr6	17544	17546	2
Deletion	Chr3	409104	409106	2
Deletion	Chr8	3947406	3947407	1
Deletion	Chr5	4004255	4004257	2
Deletion	Chr12	4190103	4190105	2
Deletion	Chr6	7549896	7549947	51
Deletion	Chr4	9480408	9480580	172
Deletion	Chr4	11011298	11011309	11
Deletion	Chr8	12845098	12845099	1
Deletion	Chr7	16381069	16381159	90
Deletion	Chr11	20885374	20885456	82
Deletion	Chr1	25037097	25037098	1	OsKitaake01g242300
Deletion	Chr5	26328017	26328019	2	OsKitaake05g232500
Deletion	Chr5	27767776	27767783	7
Deletion	Chr3	30383525	30383527	2
Deletion	Chr3	34671508	34671510	2

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes