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Mutant Information

Mutant Name	FN-44 [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN-44 Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 31

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 18501860 A-T Homo INTRON
SBS Chr1 25252085 G-A Hetero UTR_3_PRIME
SBS Chr1 37966813 A-G Hetero INTERGENIC
SBS Chr3 450085 A-G Hetero INTERGENIC
SBS Chr3 11695092 A-G Hetero UTR_3_PRIME
SBS Chr3 32709137 C-T Hetero INTERGENIC
SBS Chr4 1528040 C-T Homo INTERGENIC
SBS Chr4 30642255 A-G Hetero INTERGENIC
SBS Chr4 33444134 C-T Hetero INTRON
SBS Chr5 4492495 G-T Hetero INTERGENIC
SBS Chr5 12300266 C-A Homo INTERGENIC
SBS Chr5 15168421 T-A Homo INTERGENIC
SBS Chr5 16379837 G-A Homo INTERGENIC
SBS Chr5 18120295 G-A Hetero UTR_3_PRIME
SBS Chr6 5441154 C-A Hetero INTERGENIC
SBS Chr6 16111378 C-A Homo INTERGENIC
SBS Chr6 30937832 T-G Homo INTRON
SBS Chr7 673118 T-A Hetero INTERGENIC
SBS Chr7 10277555 A-G Homo INTERGENIC
SBS Chr7 11980659 G-A Homo INTERGENIC
SBS Chr7 12221335 T-G Hetero INTERGENIC
SBS Chr7 14907174 G-A Hetero INTERGENIC
SBS Chr7 27321778 A-T Hetero INTERGENIC
SBS Chr8 13714001 A-G Homo INTERGENIC
SBS Chr8 17768719 C-A Hetero INTERGENIC
SBS Chr9 13135020 G-T Hetero INTERGENIC
SBS Chr9 14336729 C-T Homo INTERGENIC
SBS Chr10 574884 A-C Homo INTERGENIC
SBS Chr11 5274789 C-T Homo INTERGENIC
SBS Chr11 11167776 C-T Homo INTERGENIC
SBS Chr12 10473390 G-A Hetero INTERGENIC

Deletions: 17

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr11 1433833 1433835 2 OsKitaake11g018700
Deletion Chr7 3075334 3075336 2 OsKitaake07g038600
Deletion Chr1 4728718 4728720 2
Deletion Chr5 5504747 5504875 128
Deletion Chr7 7751001 7789000 37999 OsKitaake07g085400
Deletion Chr1 8140337 8140497 160
Deletion Chr7 8165312 8165403 91 OsKitaake07g089300
Deletion Chr12 11718044 11718045 1
Deletion Chr3 12180001 12265000 84999 6
Deletion Chr11 14834947 14834948 1
Deletion Chr6 15981032 15981041 9
Deletion Chr4 20202830 20202832 2
Deletion Chr2 21428319 21428330 11
Deletion Chr4 22521961 22521962 1
Deletion Chr2 24691402 24691408 6
Deletion Chr6 26818878 26818880 2
Deletion Chr2 26970302 26970316 14

Inversions: 5

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr3 1249223 1489085 2
Inversion Chr3 1270056 1489078 2
Inversion Chr1 8869765 9100728
Inversion Chr1 8869799 9100752
Inversion Chr3 12180443 12210639

Translocations: 6

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr3 1233347 Chr1 9540431 OsKitaake03g019000
Translocation Chr3 1249215 Chr1 9540398 OsKitaake03g019100
Translocation Chr6 15909024 Chr1 16774531 OsKitaake06g153600
Translocation Chr6 16679656 Chr1 16774873
Translocation Chr11 21917293 Chr10 1512519 OsKitaake11g173500
Translocation Chr11 25741458 Chr9 3231298

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	18501860	A-T	Homo	INTRON
SBS	Chr1	25252085	G-A	Hetero	UTR_3_PRIME
SBS	Chr1	37966813	A-G	Hetero	INTERGENIC
SBS	Chr3	450085	A-G	Hetero	INTERGENIC
SBS	Chr3	11695092	A-G	Hetero	UTR_3_PRIME
SBS	Chr3	32709137	C-T	Hetero	INTERGENIC
SBS	Chr4	1528040	C-T	Homo	INTERGENIC
SBS	Chr4	30642255	A-G	Hetero	INTERGENIC
SBS	Chr4	33444134	C-T	Hetero	INTRON
SBS	Chr5	4492495	G-T	Hetero	INTERGENIC
SBS	Chr5	12300266	C-A	Homo	INTERGENIC
SBS	Chr5	15168421	T-A	Homo	INTERGENIC
SBS	Chr5	16379837	G-A	Homo	INTERGENIC
SBS	Chr5	18120295	G-A	Hetero	UTR_3_PRIME
SBS	Chr6	5441154	C-A	Hetero	INTERGENIC
SBS	Chr6	16111378	C-A	Homo	INTERGENIC
SBS	Chr6	30937832	T-G	Homo	INTRON
SBS	Chr7	673118	T-A	Hetero	INTERGENIC
SBS	Chr7	10277555	A-G	Homo	INTERGENIC
SBS	Chr7	11980659	G-A	Homo	INTERGENIC
SBS	Chr7	12221335	T-G	Hetero	INTERGENIC
SBS	Chr7	14907174	G-A	Hetero	INTERGENIC
SBS	Chr7	27321778	A-T	Hetero	INTERGENIC
SBS	Chr8	13714001	A-G	Homo	INTERGENIC
SBS	Chr8	17768719	C-A	Hetero	INTERGENIC
SBS	Chr9	13135020	G-T	Hetero	INTERGENIC
SBS	Chr9	14336729	C-T	Homo	INTERGENIC
SBS	Chr10	574884	A-C	Homo	INTERGENIC
SBS	Chr11	5274789	C-T	Homo	INTERGENIC
SBS	Chr11	11167776	C-T	Homo	INTERGENIC
SBS	Chr12	10473390	G-A	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr11	1433833	1433835	2	OsKitaake11g018700
Deletion	Chr7	3075334	3075336	2	OsKitaake07g038600
Deletion	Chr1	4728718	4728720	2
Deletion	Chr5	5504747	5504875	128
Deletion	Chr7	7751001	7789000	37999	OsKitaake07g085400
Deletion	Chr1	8140337	8140497	160
Deletion	Chr7	8165312	8165403	91	OsKitaake07g089300
Deletion	Chr12	11718044	11718045	1
Deletion	Chr3	12180001	12265000	84999	6
Deletion	Chr11	14834947	14834948	1
Deletion	Chr6	15981032	15981041	9
Deletion	Chr4	20202830	20202832	2
Deletion	Chr2	21428319	21428330	11
Deletion	Chr4	22521961	22521962	1
Deletion	Chr2	24691402	24691408	6
Deletion	Chr6	26818878	26818880	2
Deletion	Chr2	26970302	26970316	14

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr3	1249223	1489085	2
Inversion	Chr3	1270056	1489078	2
Inversion	Chr1	8869765	9100728
Inversion	Chr1	8869799	9100752
Inversion	Chr3	12180443	12210639

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes