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Mutant Information |
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Mutant Name | FN-45 [Download] |
Generation | M2 |
Genus Species | Oryza Sativa |
Cultivar | Kitaake |
Alignment File (BAM File) | Download FN-45 Alignment File |
Seed Availability | Yes [Order Seeds] |
Variant Information |
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Single base substitutions: 24
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
SBS | Chr1 | 16544842 | C-T | Hetero | INTERGENIC | |
SBS | Chr1 | 24971222 | T-A | Hetero | INTERGENIC | |
SBS | Chr1 | 30566855 | C-A | Hetero | NON_SYNONYMOUS_CODING | OsKitaake01g302500 |
SBS | Chr1 | 32534832 | C-T | Hetero | INTERGENIC | |
SBS | Chr1 | 34701058 | A-T | Hetero | INTERGENIC | |
SBS | Chr2 | 30874487 | T-C | Hetero | INTERGENIC | |
SBS | Chr3 | 240236 | C-G | Hetero | INTERGENIC | |
SBS | Chr3 | 23505642 | G-C | Hetero | INTERGENIC | |
SBS | Chr4 | 4518103 | A-G | Hetero | INTERGENIC | |
SBS | Chr4 | 10311850 | T-A | Homo | INTERGENIC | |
SBS | Chr4 | 11175581 | C-G | Hetero | INTERGENIC | |
SBS | Chr4 | 22715405 | T-A | Hetero | UTR_3_PRIME | |
SBS | Chr5 | 15769210 | A-G | Homo | INTERGENIC | |
SBS | Chr7 | 10786195 | T-G | Hetero | INTERGENIC | |
SBS | Chr7 | 24572775 | T-G | Homo | INTRON | |
SBS | Chr9 | 14085087 | T-A | Hetero | INTERGENIC | |
SBS | Chr10 | 11368410 | A-T | Hetero | INTERGENIC | |
SBS | Chr10 | 18409667 | G-T | Homo | NON_SYNONYMOUS_CODING | OsKitaake10g130400 |
SBS | Chr11 | 6963773 | T-A | Homo | INTERGENIC | |
SBS | Chr11 | 6963774 | T-A | Homo | INTERGENIC | |
SBS | Chr11 | 26602765 | G-T | Hetero | INTERGENIC | |
SBS | Chr12 | 11113284 | C-G | Homo | INTERGENIC | |
SBS | Chr12 | 15957786 | G-A | Homo | INTERGENIC | |
SBS | Chr12 | 24585625 | T-A | Hetero | INTERGENIC |
Deletions: 9
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
Deletion | Chr7 | 1222796 | 1222798 | 2 | |
Deletion | Chr8 | 2794759 | 2795089 | 330 | |
Deletion | Chr4 | 11035158 | 11035175 | 17 | |
Deletion | Chr5 | 14483622 | 14483624 | 2 | |
Deletion | Chr10 | 14638751 | 14638871 | 120 | |
Deletion | Chr1 | 20678637 | 20678638 | 1 | OsKitaake01g202600 |
Deletion | Chr7 | 22430185 | 22430186 | 1 | OsKitaake07g190200 |
Deletion | Chr7 | 27106763 | 27106851 | 88 | |
Deletion | Chr1 | 42433001 | 42450000 | 16999 | 6 |
Insertions: 4
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
Insertion | Chr5 | 30230376 | 30230384 | 7 | |
Insertion | Chr8 | 6209725 | 6209727 | 1 | |
Insertion | Chr8 | 9073214 | 9073218 | 3 | |
Insertion | Chr8 | 22823116 | 22823118 | 1 |
Inversions: 3
Variant Type |
Chromosome |
Position 1 |
Position 2 |
Number of Genes |
Inversion | Chr10 | 17564767 | 18102799 | OsKitaake10g120000 |
Inversion | Chr10 | 17564780 | 18102818 | OsKitaake10g120000 |
Inversion | Chr1 | 42448811 | 42593200 | OsKitaake01g468000 |
Translocations: 3
Variant Type |
Chromosome |
Position 1 |
Chromosome |
Position 2 |
Number of Genes |
Translocation | Chr8 | 24680960 | Chr4 | 26406218 | |
Translocation | Chr8 | 24681447 | Chr4 | 26406221 | |
Translocation | Chr11 | 26929542 | Chr4 | 1098092 |