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| Mutant Information |
|---|
| Mutant Name | FN-46 [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN-46 Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 21
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 20756696 | A-G | Hetero | INTERGENIC | |
| SBS | Chr1 | 30337034 | G-A | Homo | INTERGENIC | |
| SBS | Chr1 | 40539004 | A-T | Homo | NON_SYNONYMOUS_CODING | OsKitaake01g440400 |
| SBS | Chr1 | 40707974 | T-C | Homo | INTRON | |
| SBS | Chr2 | 25205544 | C-A | Hetero | INTERGENIC | |
| SBS | Chr2 | 25205546 | T-A | Hetero | INTERGENIC | |
| SBS | Chr2 | 26762499 | C-T | Hetero | INTERGENIC | |
| SBS | Chr2 | 32582232 | G-T | Hetero | INTERGENIC | |
| SBS | Chr2 | 32582233 | A-T | Hetero | INTERGENIC | |
| SBS | Chr2 | 36208125 | G-A | Hetero | SYNONYMOUS_CODING | |
| SBS | Chr6 | 25204940 | T-C | Hetero | INTERGENIC | |
| SBS | Chr6 | 31028714 | C-T | Hetero | INTERGENIC | |
| SBS | Chr8 | 260164 | T-C | Hetero | INTRON | |
| SBS | Chr8 | 18149736 | T-C | Hetero | INTERGENIC | |
| SBS | Chr9 | 4017730 | C-G | Homo | INTERGENIC | |
| SBS | Chr9 | 20781758 | A-C | Hetero | INTRON | |
| SBS | Chr10 | 11139385 | G-C | Hetero | INTERGENIC | |
| SBS | Chr10 | 23067003 | T-A | Homo | UTR_3_PRIME | |
| SBS | Chr10 | 23067004 | T-A | Homo | UTR_3_PRIME | |
| SBS | Chr11 | 15600597 | G-T | Hetero | INTERGENIC | |
| SBS | Chr12 | 3708215 | A-C | Hetero | INTERGENIC |
Deletions: 20
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr8 | 4889806 | 4890174 | 368 | |
| Deletion | Chr10 | 5286321 | 5286689 | 368 | OsKitaake10g037801 |
| Deletion | Chr11 | 9178154 | 9178452 | 298 | OsKitaake11g096850 |
| Deletion | Chr3 | 10747220 | 10747222 | 2 | |
| Deletion | Chr1 | 11569861 | 11570023 | 162 | |
| Deletion | Chr4 | 11945010 | 11945011 | 1 | |
| Deletion | Chr8 | 12137086 | 12137207 | 121 | |
| Deletion | Chr8 | 12823002 | 12823003 | 1 | |
| Deletion | Chr10 | 13391073 | 13391075 | 2 | |
| Deletion | Chr12 | 15312620 | 15312711 | 91 | |
| Deletion | Chr9 | 15554831 | 15554928 | 97 | |
| Deletion | Chr1 | 15729620 | 15729622 | 2 | |
| Deletion | Chr11 | 16429630 | 16429755 | 125 | |
| Deletion | Chr3 | 18452892 | 18452893 | 1 | |
| Deletion | Chr8 | 19384133 | 19384135 | 2 | |
| Deletion | Chr1 | 21395941 | 21396123 | 182 | |
| Deletion | Chr7 | 26980654 | 26980655 | 1 | OsKitaake07g251700 |
| Deletion | Chr1 | 31482133 | 31482211 | 78 | OsKitaake01g316000 |
| Deletion | Chr1 | 32180356 | 32180357 | 1 | |
| Deletion | Chr2 | 35332312 | 35332322 | 10 |
Insertions: 4
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Insertion | Chr2 | 36579018 | 36579020 | 1 | OsKitaake02g389100  |
| Insertion | Chr3 | 29264111 | 29264113 | 1 | |
| Insertion | Chr4 | 4690379 | 4690381 | 1 | |
| Insertion | Chr6 | 17787184 | 17787187 | 2 |
Inversions: 2
Variant Type |
Chromosome |
Position 1 |
Position 2 |
Number of Genes |
| Inversion | Chr11 | 3271044 | 3655552 | |
| Inversion | Chr11 | 3271068 | 3655557 |
Translocations: 2
Variant Type |
Chromosome |
Position 1 |
Chromosome |
Position 2 |
Number of Genes |
| Translocation | Chr7 | 407916 | Chr6 | 1084200 | OsKitaake07g003700 |
| Translocation | Chr7 | 411729 | Chr6 | 1084099 |