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| Mutant Information |
|---|
| Mutant Name | FN-47 [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN-47 Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 27
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 12695932 | G-A | Homo | INTRON | |
| SBS | Chr1 | 21966438 | C-G | Homo | INTRON | |
| SBS | Chr1 | 43560993 | G-C | Hetero | INTRON | |
| SBS | Chr1 | 43560997 | A-T | Hetero | INTRON | |
| SBS | Chr2 | 3361748 | C-A | Hetero | INTERGENIC | |
| SBS | Chr2 | 12893050 | C-T | Homo | INTERGENIC | |
| SBS | Chr2 | 24372632 | G-A | Hetero | INTERGENIC | |
| SBS | Chr3 | 12909132 | T-A | Homo | INTERGENIC | |
| SBS | Chr3 | 15800732 | C-T | Hetero | INTERGENIC | |
| SBS | Chr3 | 21731035 | T-C | Hetero | INTERGENIC | |
| SBS | Chr3 | 31274930 | G-A | Hetero | INTRON | |
| SBS | Chr4 | 18082532 | C-A | Homo | INTERGENIC | |
| SBS | Chr4 | 23255415 | G-A | Hetero | INTERGENIC | |
| SBS | Chr5 | 15068621 | T-A | Homo | INTERGENIC | |
| SBS | Chr6 | 1306979 | G-A | Homo | INTERGENIC | |
| SBS | Chr6 | 11137301 | G-A | Homo | UTR_3_PRIME | |
| SBS | Chr6 | 15120224 | A-T | Hetero | INTERGENIC | |
| SBS | Chr6 | 19957931 | T-C | Hetero | INTRON | |
| SBS | Chr6 | 28012337 | G-A | Homo | INTERGENIC | |
| SBS | Chr7 | 19587676 | G-A | Hetero | NON_SYNONYMOUS_CODING | OsKitaake07g159200 |
| SBS | Chr7 | 25221141 | C-G | Homo | INTERGENIC | |
| SBS | Chr8 | 3802924 | A-T | Hetero | INTRON | |
| SBS | Chr8 | 3802925 | G-T | Hetero | INTRON | |
| SBS | Chr8 | 5520224 | G-T | Hetero | INTRON | |
| SBS | Chr8 | 7103553 | C-T | Homo | INTERGENIC | |
| SBS | Chr8 | 16796940 | G-A | Hetero | INTERGENIC | |
| SBS | Chr8 | 28265159 | G-A | Hetero | INTERGENIC |
Deletions: 11
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr4 | 4466715 | 4466716 | 1 | |
| Deletion | Chr11 | 7346001 | 7438000 | 91999 | 6 |
| Deletion | Chr8 | 13924848 | 13924849 | 1 | |
| Deletion | Chr8 | 15871742 | 15871743 | 1 | |
| Deletion | Chr4 | 17253871 | 17253872 | 1 | |
| Deletion | Chr6 | 22150013 | 22150033 | 20 | |
| Deletion | Chr7 | 27480580 | 27480706 | 126 | |
| Deletion | Chr5 | 29525558 | 29525560 | 2 | OsKitaake05g280600 |
| Deletion | Chr4 | 30319031 | 30319052 | 21 | |
| Deletion | Chr1 | 42670727 | 42671062 | 335 | |
| Deletion | Chr1 | 44047842 | 44048106 | 264 |
Insertions: 3
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Insertion | Chr3 | 8671974 | 8671978 | 3 | |
| Insertion | Chr5 | 30228119 | 30228121 | 1 | |
| Insertion | Chr12 | 11658594 | 11658596 | 1 |
Inversions: 4
Variant Type |
Chromosome |
Position 1 |
Position 2 |
Number of Genes |
| Inversion | Chr2 | 14031979 | 14233200 | OsKitaake02g152600 |
| Inversion | Chr2 | 14031982 | 14233215 | OsKitaake02g152600 |
| Inversion | Chr1 | 38410250 | 39058565 | OsKitaake01g419100 |
| Inversion | Chr1 | 38410255 | 39058568 | OsKitaake01g419100 |
Translocations: 2
Variant Type |
Chromosome |
Position 1 |
Chromosome |
Position 2 |
Number of Genes |
| Translocation | Chr7 | 1119223 | Chr4 | 23555040 | OsKitaake04g147500 |
| Translocation | Chr11 | 15265372 | Chr8 | 2144692 |