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| Mutant Information |
|---|
| Mutant Name | FN-48 [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN-48 Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 32
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr2 | 10899420 | C-A | Hetero | INTERGENIC | |
| SBS | Chr2 | 16738708 | A-G | Hetero | INTERGENIC | |
| SBS | Chr3 | 3270349 | T-A | Hetero | INTRON | |
| SBS | Chr3 | 12093152 | T-C | Homo | INTERGENIC | |
| SBS | Chr3 | 15303427 | C-T | Homo | INTERGENIC | |
| SBS | Chr3 | 15763962 | C-T | Homo | INTERGENIC | |
| SBS | Chr4 | 440912 | G-C | Hetero | INTERGENIC | |
| SBS | Chr4 | 12145312 | G-A | Hetero | INTERGENIC | |
| SBS | Chr4 | 32755250 | G-A | Homo | INTERGENIC | |
| SBS | Chr5 | 3926918 | A-T | Homo | INTRON | |
| SBS | Chr5 | 27158955 | T-C | Hetero | UTR_3_PRIME | |
| SBS | Chr5 | 27243536 | T-A | Hetero | INTERGENIC | |
| SBS | Chr6 | 6284631 | G-A | Hetero | INTERGENIC | |
| SBS | Chr6 | 21650579 | A-T | Hetero | INTERGENIC | |
| SBS | Chr7 | 12606893 | C-A | Hetero | INTERGENIC | |
| SBS | Chr7 | 15068943 | T-A | Hetero | INTERGENIC | |
| SBS | Chr8 | 11013930 | G-T | Hetero | INTERGENIC | |
| SBS | Chr8 | 11013962 | T-G | Hetero | INTERGENIC | |
| SBS | Chr8 | 11013980 | C-T | Hetero | INTERGENIC | |
| SBS | Chr9 | 1145636 | C-T | Homo | INTERGENIC | |
| SBS | Chr9 | 10563466 | A-G | Homo | INTERGENIC | |
| SBS | Chr10 | 14557554 | T-A | Homo | INTERGENIC | |
| SBS | Chr10 | 14557555 | G-A | Homo | INTERGENIC | |
| SBS | Chr11 | 5650395 | T-C | Homo | INTRON | |
| SBS | Chr11 | 10617443 | A-T | Hetero | INTERGENIC | |
| SBS | Chr11 | 27414874 | G-A | Hetero | INTERGENIC | |
| SBS | Chr11 | 28359848 | G-A | Hetero | INTERGENIC | |
| SBS | Chr11 | 28786670 | A-C | Hetero | INTRON | |
| SBS | Chr12 | 1128045 | G-T | Hetero | INTERGENIC | |
| SBS | Chr12 | 1128046 | A-T | Hetero | INTERGENIC | |
| SBS | Chr12 | 1128047 | C-T | Hetero | INTERGENIC | |
| SBS | Chr12 | 21282931 | G-A | Homo | INTERGENIC |
Deletions: 11
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr12 | 809653 | 809655 | 2 | |
| Deletion | Chr9 | 987020 | 987021 | 1 | |
| Deletion | Chr12 | 4269706 | 4269708 | 2 | |
| Deletion | Chr6 | 7838572 | 7838783 | 211 | OsKitaake06g100000 |
| Deletion | Chr5 | 11279153 | 11279160 | 7 | |
| Deletion | Chr10 | 12605648 | 12605673 | 25 | |
| Deletion | Chr6 | 13327001 | 13341000 | 13999 | |
| Deletion | Chr5 | 16002768 | 16002874 | 106 | |
| Deletion | Chr11 | 21167586 | 21167653 | 67 | |
| Deletion | Chr6 | 22599001 | 22616000 | 16999 | 5 |
| Deletion | Chr2 | 23205845 | 23205941 | 96 |
Insertions: 4
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Insertion | Chr3 | 35619209 | 35619212 | 2 | |
| Insertion | Chr11 | 28974532 | 28974536 | 3 | |
| Insertion | Chr12 | 575285 | 575293 | 7 | |
| Insertion | Chr9 | 13906984 | 13906986 | 1 |
Inversions: 3
Variant Type |
Chromosome |
Position 1 |
Position 2 |
Number of Genes |
| Inversion | Chr8 | 11078115 | 11500660 | |
| Inversion | Chr6 | 12547921 | 13327466 | |
| Inversion | Chr6 | 12547939 | 13214538 |
Translocations: 5
Variant Type |
Chromosome |
Position 1 |
Chromosome |
Position 2 |
Number of Genes |
| Translocation | Chr9 | 3024946 | Chr3 | 29055084 | |
| Translocation | Chr9 | 3026508 | Chr8 | 10944077 | |
| Translocation | Chr8 | 10944601 | Chr3 | 29055069 | |
| Translocation | Chr3 | 36831726 | Chr1 | 37589924 | |
| Translocation | Chr3 | 36832155 | Chr1 | 37589924 |