Search Kitaake

Mutant Information

Mutant Name	FN-49 [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN-49 Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 40

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 12607544 A-G Hetero INTERGENIC
SBS Chr1 36954495 A-T Hetero INTERGENIC
SBS Chr2 10006956 C-T Hetero INTERGENIC
SBS Chr2 17647681 A-T Hetero INTERGENIC
SBS Chr2 21091495 T-A Hetero INTERGENIC
SBS Chr4 4281100 C-A Hetero INTERGENIC
SBS Chr4 6761984 G-A Hetero INTERGENIC
SBS Chr4 17797503 G-A Hetero INTERGENIC
SBS Chr4 36831443 C-T Hetero UTR_3_PRIME
SBS Chr5 2461215 T-C Hetero UTR_5_PRIME
SBS Chr5 16323391 T-A Hetero NON_SYNONYMOUS_CODING OsKitaake05g124800
SBS Chr5 26731826 T-C Hetero INTERGENIC
SBS Chr6 3680468 T-A Hetero INTERGENIC
SBS Chr6 25602261 G-A Hetero INTRON
SBS Chr6 25756238 C-A Hetero INTERGENIC
SBS Chr6 26904462 G-A Hetero INTERGENIC
SBS Chr7 2580349 A-C Hetero INTERGENIC
SBS Chr7 5415859 G-A Hetero INTERGENIC
SBS Chr7 6614354 G-A Hetero INTERGENIC
SBS Chr7 6631076 C-T Hetero SYNONYMOUS_CODING
SBS Chr7 7234530 C-T Hetero INTERGENIC
SBS Chr7 19329717 A-G Hetero INTERGENIC
SBS Chr7 21716317 A-T Hetero INTERGENIC
SBS Chr8 516387 C-T Hetero UTR_3_PRIME
SBS Chr8 576969 T-C Hetero INTRON
SBS Chr8 10440202 C-T Hetero INTERGENIC
SBS Chr8 16753678 C-T Hetero INTERGENIC
SBS Chr8 20096814 C-A Homo INTERGENIC
SBS Chr8 25457645 C-A Hetero INTRON
SBS Chr8 25457646 C-T Hetero INTRON
SBS Chr9 4300068 C-T Hetero INTERGENIC
SBS Chr11 18578331 T-G Hetero INTERGENIC
SBS Chr11 27866658 T-C Hetero INTERGENIC
SBS Chr12 10013433 G-A Hetero INTRON
SBS Chr12 11593735 G-T Hetero INTERGENIC
SBS Chr12 13018112 A-T Hetero INTERGENIC
SBS Chr12 16813395 A-G Hetero INTERGENIC
SBS Chr12 17416927 T-A Hetero INTERGENIC
SBS Chr12 20585098 G-T Hetero INTERGENIC
SBS Chr12 21768948 A-G Hetero INTRON

Deletions: 22

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr2 2283496 2283497 1
Deletion Chr9 3119885 3120032 147
Deletion Chr7 4343204 4343208 4
Deletion Chr7 4649935 4649937 2
Deletion Chr1 5764502 5764509 7
Deletion Chr4 6120224 6120230 6
Deletion Chr9 9000001 9033000 32999 3
Deletion Chr11 10248867 10249080 213
Deletion Chr9 10583253 10583257 4
Deletion Chr6 14273007 14273217 210
Deletion Chr7 14375791 14375798 7
Deletion Chr3 14792249 14792251 2
Deletion Chr11 14798447 14798448 1
Deletion Chr7 16163783 16163784 1
Deletion Chr2 17925873 17925877 4
Deletion Chr2 17991497 17991500 3
Deletion Chr10 20255972 20255974 2
Deletion Chr3 25955225 25955242 17
Deletion Chr12 26444333 26444334 1
Deletion Chr8 28189938 28189942 4
Deletion Chr6 30902691 30902693 2 OsKitaake06g292600
Deletion Chr3 37428821 37428911 90

Insertions: 3

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr4 6314806 6314808 1
Insertion Chr1 8263843 8263846 2
Insertion Chr12 11707370 11707373 2

Inversions: 2

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr11 14899735 14922638
Inversion Chr11 14899741 14922642

Translocations: 1

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr8 16156173 Chr4 33125534 OsKitaake04g269200

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	12607544	A-G	Hetero	INTERGENIC
SBS	Chr1	36954495	A-T	Hetero	INTERGENIC
SBS	Chr2	10006956	C-T	Hetero	INTERGENIC
SBS	Chr2	17647681	A-T	Hetero	INTERGENIC
SBS	Chr2	21091495	T-A	Hetero	INTERGENIC
SBS	Chr4	4281100	C-A	Hetero	INTERGENIC
SBS	Chr4	6761984	G-A	Hetero	INTERGENIC
SBS	Chr4	17797503	G-A	Hetero	INTERGENIC
SBS	Chr4	36831443	C-T	Hetero	UTR_3_PRIME
SBS	Chr5	2461215	T-C	Hetero	UTR_5_PRIME
SBS	Chr5	16323391	T-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake05g124800
SBS	Chr5	26731826	T-C	Hetero	INTERGENIC
SBS	Chr6	3680468	T-A	Hetero	INTERGENIC
SBS	Chr6	25602261	G-A	Hetero	INTRON
SBS	Chr6	25756238	C-A	Hetero	INTERGENIC
SBS	Chr6	26904462	G-A	Hetero	INTERGENIC
SBS	Chr7	2580349	A-C	Hetero	INTERGENIC
SBS	Chr7	5415859	G-A	Hetero	INTERGENIC
SBS	Chr7	6614354	G-A	Hetero	INTERGENIC
SBS	Chr7	6631076	C-T	Hetero	SYNONYMOUS_CODING
SBS	Chr7	7234530	C-T	Hetero	INTERGENIC
SBS	Chr7	19329717	A-G	Hetero	INTERGENIC
SBS	Chr7	21716317	A-T	Hetero	INTERGENIC
SBS	Chr8	516387	C-T	Hetero	UTR_3_PRIME
SBS	Chr8	576969	T-C	Hetero	INTRON
SBS	Chr8	10440202	C-T	Hetero	INTERGENIC
SBS	Chr8	16753678	C-T	Hetero	INTERGENIC
SBS	Chr8	20096814	C-A	Homo	INTERGENIC
SBS	Chr8	25457645	C-A	Hetero	INTRON
SBS	Chr8	25457646	C-T	Hetero	INTRON
SBS	Chr9	4300068	C-T	Hetero	INTERGENIC
SBS	Chr11	18578331	T-G	Hetero	INTERGENIC
SBS	Chr11	27866658	T-C	Hetero	INTERGENIC
SBS	Chr12	10013433	G-A	Hetero	INTRON
SBS	Chr12	11593735	G-T	Hetero	INTERGENIC
SBS	Chr12	13018112	A-T	Hetero	INTERGENIC
SBS	Chr12	16813395	A-G	Hetero	INTERGENIC
SBS	Chr12	17416927	T-A	Hetero	INTERGENIC
SBS	Chr12	20585098	G-T	Hetero	INTERGENIC
SBS	Chr12	21768948	A-G	Hetero	INTRON

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr2	2283496	2283497	1
Deletion	Chr9	3119885	3120032	147
Deletion	Chr7	4343204	4343208	4
Deletion	Chr7	4649935	4649937	2
Deletion	Chr1	5764502	5764509	7
Deletion	Chr4	6120224	6120230	6
Deletion	Chr9	9000001	9033000	32999	3
Deletion	Chr11	10248867	10249080	213
Deletion	Chr9	10583253	10583257	4
Deletion	Chr6	14273007	14273217	210
Deletion	Chr7	14375791	14375798	7
Deletion	Chr3	14792249	14792251	2
Deletion	Chr11	14798447	14798448	1
Deletion	Chr7	16163783	16163784	1
Deletion	Chr2	17925873	17925877	4
Deletion	Chr2	17991497	17991500	3
Deletion	Chr10	20255972	20255974	2
Deletion	Chr3	25955225	25955242	17
Deletion	Chr12	26444333	26444334	1
Deletion	Chr8	28189938	28189942	4
Deletion	Chr6	30902691	30902693	2	OsKitaake06g292600
Deletion	Chr3	37428821	37428911	90

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr11	14899735	14922638
Inversion	Chr11	14899741	14922642

Main menu

You are here

Search Kitaake

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes