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| Mutant Information |
|---|
| Mutant Name | FN-5 [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN-5 Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 32
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 14809781 | A-G | Hetero | INTERGENIC | |
| SBS | Chr1 | 21648505 | G-A | Hetero | INTERGENIC | |
| SBS | Chr1 | 25157538 | G-A | Hetero | INTERGENIC | |
| SBS | Chr1 | 30627101 | G-A | Hetero | INTERGENIC | |
| SBS | Chr1 | 40121373 | A-C | Hetero | INTERGENIC | |
| SBS | Chr1 | 41452470 | A-G | Hetero | INTRON | |
| SBS | Chr1 | 41452471 | G-T | Hetero | INTRON | |
| SBS | Chr2 | 12751079 | C-T | Homo | INTRON | |
| SBS | Chr2 | 13054817 | C-T | Homo | INTERGENIC | |
| SBS | Chr3 | 2990543 | G-A | Hetero | INTERGENIC | |
| SBS | Chr3 | 28624221 | T-A | Hetero | INTERGENIC | |
| SBS | Chr3 | 35989307 | G-T | Hetero | NON_SYNONYMOUS_CODING | OsKitaake03g397100 |
| SBS | Chr4 | 6169037 | T-A | Homo | INTERGENIC | |
| SBS | Chr4 | 6169038 | C-A | Homo | INTERGENIC | |
| SBS | Chr4 | 14025701 | G-A | Homo | INTERGENIC | |
| SBS | Chr5 | 12314182 | C-G | Homo | INTERGENIC | |
| SBS | Chr5 | 14184946 | A-G | Homo | INTERGENIC | |
| SBS | Chr5 | 15353561 | G-A | Homo | INTERGENIC | |
| SBS | Chr5 | 26593231 | G-A | Hetero | INTERGENIC | |
| SBS | Chr5 | 28317976 | G-A | Hetero | INTERGENIC | |
| SBS | Chr5 | 29676192 | C-A | Homo | INTERGENIC | |
| SBS | Chr6 | 1192863 | T-A | Homo | INTERGENIC | |
| SBS | Chr6 | 1192867 | G-T | Homo | INTERGENIC | |
| SBS | Chr6 | 23865219 | A-G | Hetero | NON_SYNONYMOUS_CODING | OsKitaake06g210700 |
| SBS | Chr8 | 3123115 | T-C | Hetero | INTRON | |
| SBS | Chr9 | 4564630 | C-A | Hetero | INTERGENIC | |
| SBS | Chr9 | 5021573 | A-G | Hetero | INTERGENIC | |
| SBS | Chr10 | 9006150 | A-G | Hetero | INTERGENIC | |
| SBS | Chr10 | 18788916 | A-G | Homo | INTERGENIC | |
| SBS | Chr11 | 2030896 | G-A | Hetero | SYNONYMOUS_CODING | |
| SBS | Chr11 | 5399933 | C-T | Homo | INTERGENIC | |
| SBS | Chr11 | 5942621 | A-T | Homo | INTERGENIC |
Deletions: 9
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr8 | 2106001 | 2175000 | 68999 | 13 |
| Deletion | Chr2 | 4556989 | 4556996 | 7 | OsKitaake02g063400 |
| Deletion | Chr7 | 4649935 | 4649937 | 2 | |
| Deletion | Chr8 | 9753680 | 9753682 | 2 | |
| Deletion | Chr11 | 16340834 | 16340836 | 2 | |
| Deletion | Chr6 | 18341735 | 18341748 | 13 | |
| Deletion | Chr10 | 22753547 | 22753553 | 6 | OsKitaake10g188400 |
| Deletion | Chr6 | 26458732 | 26458734 | 2 | |
| Deletion | Chr1 | 37047951 | 37047952 | 1 | OsKitaake01g394900 |
Insertions: 1
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Insertion | Chr12 | 22946357 | 22946361 | 3 |
Inversions: 2
Variant Type |
Chromosome |
Position 1 |
Position 2 |
Number of Genes |
| Inversion | Chr8 | 2108115 | 2957705 | |
| Inversion | Chr8 | 2167918 | 2480169 |
Translocations: 2
Variant Type |
Chromosome |
Position 1 |
Chromosome |
Position 2 |
Number of Genes |
| Translocation | Chr8 | 20682080 | Chr3 | 29421523 | OsKitaake08g154200 |
| Translocation | Chr8 | 20682289 | Chr3 | 29421541 | OsKitaake08g154200 |