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| Mutant Information |
|---|
| Mutant Name | FN-51 [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN-51 Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 26
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 16272847 | T-A | Hetero | INTERGENIC | |
| SBS | Chr1 | 31235089 | G-A | Homo | INTERGENIC | |
| SBS | Chr2 | 504442 | A-T | Homo | INTERGENIC | |
| SBS | Chr2 | 3732165 | T-A | Homo | INTERGENIC | |
| SBS | Chr2 | 3732166 | G-A | Homo | INTERGENIC | |
| SBS | Chr2 | 3732167 | G-A | Homo | INTERGENIC | |
| SBS | Chr2 | 36843589 | G-A | Homo | NON_SYNONYMOUS_CODING | OsKitaake02g393800 |
| SBS | Chr3 | 26029224 | G-A | Hetero | INTRON | |
| SBS | Chr3 | 28749761 | C-T | Homo | NON_SYNONYMOUS_CODING | OsKitaake03g297700 |
| SBS | Chr4 | 5997802 | C-A | Homo | INTERGENIC | |
| SBS | Chr4 | 26746860 | A-G | Hetero | INTERGENIC | |
| SBS | Chr4 | 26939023 | T-A | Hetero | INTRON | |
| SBS | Chr4 | 35747345 | T-A | Homo | INTERGENIC | |
| SBS | Chr5 | 22469144 | C-T | Homo | INTERGENIC | |
| SBS | Chr6 | 28720705 | G-A | Homo | INTERGENIC | |
| SBS | Chr8 | 19537652 | C-T | Homo | INTERGENIC | |
| SBS | Chr8 | 27493082 | C-T | Homo | INTERGENIC | |
| SBS | Chr9 | 14102700 | C-T | Hetero | INTRON | |
| SBS | Chr10 | 7192340 | G-C | Homo | INTERGENIC | |
| SBS | Chr10 | 13401694 | T-A | Hetero | INTERGENIC | |
| SBS | Chr11 | 9142985 | C-T | Homo | INTRON | |
| SBS | Chr11 | 9270446 | C-A | Homo | INTERGENIC | |
| SBS | Chr11 | 23796085 | C-T | Hetero | INTERGENIC | |
| SBS | Chr12 | 10079218 | G-A | Homo | INTERGENIC | |
| SBS | Chr12 | 13043591 | C-T | Hetero | INTERGENIC | |
| SBS | Chr12 | 17055145 | A-G | Homo | INTERGENIC |
Deletions: 13
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr6 | 5941 | 5942 | 1 | |
| Deletion | Chr10 | 252365 | 252547 | 182 | |
| Deletion | Chr5 | 3962691 | 3962693 | 2 | OsKitaake05g047700 |
| Deletion | Chr12 | 4190103 | 4190105 | 2 | |
| Deletion | Chr4 | 7060834 | 7060842 | 8 | |
| Deletion | Chr11 | 9456712 | 9456719 | 7 | |
| Deletion | Chr9 | 9670435 | 9670444 | 9 | |
| Deletion | Chr11 | 11101724 | 11101726 | 2 | |
| Deletion | Chr8 | 13915933 | 13915934 | 1 | |
| Deletion | Chr8 | 23896996 | 23896998 | 2 | |
| Deletion | Chr6 | 24996336 | 24996385 | 49 | |
| Deletion | Chr5 | 25925642 | 25925736 | 94 | |
| Deletion | Chr6 | 30878231 | 30878232 | 1 | OsKitaake06g292200 |
Insertions: 2
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Insertion | Chr6 | 10943693 | 10943723 | 29 | |
| Insertion | Chr6 | 11200865 | 11200886 | 20 |
Inversions: 2
Variant Type |
Chromosome |
Position 1 |
Position 2 |
Number of Genes |
| Inversion | Chr8 | 7467895 | 7470550 | |
| Inversion | Chr10 | 13130775 | 13150174 |