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| Mutant Information |
|---|
| Mutant Name | FN-52 [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN-52 Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 26
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 6433418 | A-T | Hetero | INTRON | |
| SBS | Chr1 | 15168259 | G-C | Hetero | INTERGENIC | |
| SBS | Chr1 | 15245504 | G-A | Hetero | INTERGENIC | |
| SBS | Chr1 | 17958423 | T-A | Hetero | INTERGENIC | |
| SBS | Chr1 | 19322771 | G-A | Hetero | INTERGENIC | |
| SBS | Chr1 | 26210500 | G-A | Homo | INTERGENIC | |
| SBS | Chr3 | 11688530 | C-T | Hetero | STOP_GAINED | OsKitaake03g158800 |
| SBS | Chr3 | 23515489 | G-A | Hetero | INTERGENIC | |
| SBS | Chr3 | 33301449 | C-T | Homo | UTR_5_PRIME | |
| SBS | Chr3 | 37692347 | G-T | Homo | INTERGENIC | |
| SBS | Chr4 | 11561099 | G-T | Homo | INTERGENIC | |
| SBS | Chr4 | 13293800 | G-A | Homo | INTERGENIC | |
| SBS | Chr4 | 13293802 | C-A | Homo | INTERGENIC | |
| SBS | Chr4 | 21031825 | A-C | Homo | SYNONYMOUS_CODING | |
| SBS | Chr4 | 26034121 | G-A | Homo | INTERGENIC | |
| SBS | Chr4 | 31526603 | A-G | Hetero | INTRON | |
| SBS | Chr4 | 31998371 | A-T | Hetero | SYNONYMOUS_CODING | |
| SBS | Chr5 | 23285366 | G-T | Hetero | INTERGENIC | |
| SBS | Chr5 | 23285368 | A-T | Hetero | INTERGENIC | |
| SBS | Chr6 | 20133410 | C-A | Hetero | INTERGENIC | |
| SBS | Chr10 | 1528821 | C-T | Homo | UTR_3_PRIME | |
| SBS | Chr10 | 12366897 | G-A | Homo | INTERGENIC | |
| SBS | Chr10 | 14896891 | G-A | Homo | NON_SYNONYMOUS_CODING | OsKitaake10g092801 |
| SBS | Chr11 | 11119591 | T-C | Hetero | INTERGENIC | |
| SBS | Chr11 | 17156581 | A-C | Hetero | INTERGENIC | |
| SBS | Chr12 | 15501249 | C-A | Hetero | INTERGENIC |
Deletions: 9
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr8 | 3573932 | 3573938 | 6 | |
| Deletion | Chr12 | 5791503 | 5791504 | 1 | OsKitaake12g070000 |
| Deletion | Chr4 | 9891250 | 9891251 | 1 | |
| Deletion | Chr3 | 11028001 | 11072000 | 43999 | 8 |
| Deletion | Chr7 | 21597183 | 21597184 | 1 | |
| Deletion | Chr8 | 22435153 | 22435157 | 4 | |
| Deletion | Chr1 | 33219184 | 33219185 | 1 | |
| Deletion | Chr1 | 34894125 | 34894129 | 4 | |
| Deletion | Chr1 | 44010056 | 44010061 | 5 |