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| Mutant Information |
|---|
| Mutant Name | FN-53 [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN-53 Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 27
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 15083071 | A-T | Homo | INTERGENIC | |
| SBS | Chr1 | 20596842 | A-G | Hetero | INTRON | |
| SBS | Chr2 | 18496300 | G-A | Hetero | INTERGENIC | |
| SBS | Chr2 | 18496301 | G-C | Hetero | INTERGENIC | |
| SBS | Chr2 | 30672719 | C-T | Hetero | INTERGENIC | |
| SBS | Chr2 | 31126006 | G-T | Hetero | INTRON | |
| SBS | Chr2 | 33247084 | C-T | Hetero | UTR_3_PRIME | |
| SBS | Chr3 | 18623828 | T-C | Hetero | INTRON | |
| SBS | Chr3 | 31135932 | T-A | Hetero | INTERGENIC | |
| SBS | Chr4 | 3369902 | C-A | Homo | INTERGENIC | |
| SBS | Chr4 | 7887378 | T-C | Homo | INTERGENIC | |
| SBS | Chr4 | 36708494 | G-A | Hetero | NON_SYNONYMOUS_CODING | OsKitaake04g319700 |
| SBS | Chr5 | 4826105 | T-C | Hetero | INTRON | |
| SBS | Chr5 | 11000217 | A-G | Homo | INTERGENIC | |
| SBS | Chr5 | 11908381 | C-T | Hetero | INTERGENIC | |
| SBS | Chr5 | 22356372 | C-T | Homo | INTERGENIC | |
| SBS | Chr6 | 6619489 | T-C | Homo | NON_SYNONYMOUS_CODING | OsKitaake06g086400 |
| SBS | Chr6 | 13433591 | C-G | Hetero | INTRON | |
| SBS | Chr6 | 19574279 | G-A | Homo | INTERGENIC | |
| SBS | Chr7 | 6772903 | C-T | Hetero | INTERGENIC | |
| SBS | Chr7 | 10603794 | A-T | Hetero | INTRON | |
| SBS | Chr7 | 17059293 | A-C | Hetero | INTERGENIC | |
| SBS | Chr8 | 13895495 | C-G | Hetero | INTERGENIC | |
| SBS | Chr10 | 16094994 | A-T | Hetero | INTERGENIC | |
| SBS | Chr11 | 8024639 | A-G | Homo | INTERGENIC | |
| SBS | Chr11 | 12131620 | G-T | Hetero | INTRON | |
| SBS | Chr12 | 1137542 | A-G | Hetero | UTR_5_PRIME |
Deletions: 14
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr6 | 60803 | 60804 | 1 | |
| Deletion | Chr10 | 1423020 | 1423145 | 125 | |
| Deletion | Chr4 | 2405314 | 2405316 | 2 | |
| Deletion | Chr10 | 3115132 | 3115133 | 1 | |
| Deletion | Chr5 | 12895477 | 12895480 | 3 | |
| Deletion | Chr9 | 16141056 | 16141058 | 2 | |
| Deletion | Chr5 | 16586839 | 16586847 | 8 | |
| Deletion | Chr11 | 17793375 | 17793381 | 6 | |
| Deletion | Chr3 | 18503001 | 18511000 | 7999 | OsKitaake03g224200 |
| Deletion | Chr5 | 19431045 | 19431047 | 2 | |
| Deletion | Chr6 | 20004843 | 20004853 | 10 | |
| Deletion | Chr5 | 23788354 | 23788358 | 4 | |
| Deletion | Chr11 | 24128392 | 24128394 | 2 | |
| Deletion | Chr3 | 33317898 | 33317899 | 1 | OsKitaake03g355900 |
Insertions: 3
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Insertion | Chr10 | 12446770 | 12446776 | 5 | |
| Insertion | Chr2 | 18179771 | 18179773 | 1 | |
| Insertion | Chr6 | 31040491 | 31040526 | 34 |
Inversions: 4
Variant Type |
Chromosome |
Position 1 |
Position 2 |
Number of Genes |
| Inversion | Chr3 | 17228576 | 17269365 | |
| Inversion | Chr3 | 17229106 | 17269506 | |
| Inversion | Chr10 | 18526876 | 18895217 | 2 |
| Inversion | Chr10 | 18526898 | 18895256 | 2 |
Translocations: 2
Variant Type |
Chromosome |
Position 1 |
Chromosome |
Position 2 |
Number of Genes |
| Translocation | Chr7 | 24069198 | Chr3 | 6724448 | |
| Translocation | Chr7 | 24069209 | Chr3 | 6653158 |