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| Mutant Information |
|---|
| Mutant Name | FN-54 [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN-54 Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 22
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 5454901 | G-A | Hetero | INTERGENIC | |
| SBS | Chr1 | 7113361 | C-T | Hetero | INTERGENIC | |
| SBS | Chr3 | 7291526 | T-G | Hetero | NON_SYNONYMOUS_CODING | OsKitaake03g101700 |
| SBS | Chr3 | 13577163 | C-T | Hetero | INTERGENIC | |
| SBS | Chr3 | 24808562 | C-T | Homo | INTERGENIC | |
| SBS | Chr3 | 26790223 | C-T | Homo | INTERGENIC | |
| SBS | Chr4 | 4358230 | G-T | Homo | INTERGENIC | |
| SBS | Chr4 | 5791203 | A-T | Hetero | INTERGENIC | |
| SBS | Chr4 | 6889468 | C-T | Homo | INTERGENIC | |
| SBS | Chr4 | 17866003 | G-A | Hetero | INTERGENIC | |
| SBS | Chr4 | 31908720 | G-A | Hetero | INTERGENIC | |
| SBS | Chr5 | 8990074 | G-A | Homo | INTERGENIC | |
| SBS | Chr5 | 28900532 | G-T | Homo | INTRON | |
| SBS | Chr6 | 9053755 | G-A | Hetero | INTERGENIC | |
| SBS | Chr6 | 27760720 | G-A | Homo | INTRON | |
| SBS | Chr8 | 5979047 | T-C | Hetero | INTERGENIC | |
| SBS | Chr9 | 2031373 | C-T | Hetero | INTERGENIC | |
| SBS | Chr9 | 4172313 | C-T | Homo | INTERGENIC | |
| SBS | Chr10 | 16532703 | T-C | Hetero | INTERGENIC | |
| SBS | Chr11 | 8684694 | A-G | Homo | INTERGENIC | |
| SBS | Chr11 | 25375132 | A-T | Hetero | INTERGENIC | |
| SBS | Chr12 | 21796694 | G-A | Hetero | UTR_3_PRIME |
Deletions: 18
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr2 | 1741621 | 1741623 | 2 | |
| Deletion | Chr12 | 7895734 | 7895735 | 1 | |
| Deletion | Chr4 | 13171382 | 13171383 | 1 | |
| Deletion | Chr10 | 16813091 | 16813093 | 2 | |
| Deletion | Chr4 | 17700001 | 17744000 | 43999 | 3 |
| Deletion | Chr5 | 18646928 | 18646932 | 4 | |
| Deletion | Chr8 | 20932001 | 20982000 | 49999 | 6 |
| Deletion | Chr11 | 20958001 | 21024000 | 65999 | 7 |
| Deletion | Chr6 | 21351099 | 21351102 | 3 | |
| Deletion | Chr11 | 21897001 | 22241000 | 343999 | 22 |
| Deletion | Chr11 | 22244001 | 22255000 | 10999 | OsKitaake11g176100 |
| Deletion | Chr2 | 23011427 | 23011429 | 2 | OsKitaake02g224700 |
| Deletion | Chr5 | 23442429 | 23442430 | 1 | OsKitaake05g196400 |
| Deletion | Chr1 | 28899981 | 28899982 | 1 | OsKitaake01g280700 |
| Deletion | Chr1 | 29481332 | 29481333 | 1 | |
| Deletion | Chr4 | 31928824 | 31928825 | 1 | |
| Deletion | Chr1 | 33677400 | 33677401 | 1 | |
| Deletion | Chr1 | 39756012 | 39756013 | 1 |
Insertions: 2
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Insertion | Chr10 | 4492991 | 4492994 | 2 | |
| Insertion | Chr10 | 20017378 | 20017380 | 1 |
Translocations: 6
Variant Type |
Chromosome |
Position 1 |
Chromosome |
Position 2 |
Number of Genes |
| Translocation | Chr5 | 15278992 | Chr2 | 30069786 | OsKitaake02g305400 |
| Translocation | Chr8 | 20978762 | Chr5 | 15278992 | |
| Translocation | Chr8 | 20978764 | Chr2 | 30069677 | OsKitaake02g305400 |
| Translocation | Chr8 | 20980252 | Chr5 | 15278992 | |
| Translocation | Chr11 | 20985567 | Chr4 | 29333412 | OsKitaake11g165701 |
| Translocation | Chr11 | 20986701 | Chr4 | 29333401 | OsKitaake11g165701 |