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Mutant Information

Mutant Name	FN-55 [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN-55 Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 27

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 28264122 T-C Hetero NON_SYNONYMOUS_CODING OsKitaake01g274100
SBS Chr1 28329158 G-A Hetero INTERGENIC
SBS Chr1 41084052 C-T Hetero INTERGENIC
SBS Chr2 12179373 G-A Hetero INTERGENIC
SBS Chr2 24991840 C-T Homo INTERGENIC
SBS Chr2 36628060 C-T Homo INTERGENIC
SBS Chr3 16590186 A-T Hetero INTERGENIC
SBS Chr3 34429636 C-A Hetero INTERGENIC
SBS Chr4 35861044 G-A Hetero NON_SYNONYMOUS_CODING OsKitaake04g307300
SBS Chr5 69888 G-T Hetero NON_SYNONYMOUS_CODING OsKitaake05g000600
SBS Chr5 69890 T-A Hetero NON_SYNONYMOUS_CODING OsKitaake05g000600
SBS Chr5 6849696 T-A Hetero INTERGENIC
SBS Chr5 19496666 A-C Hetero INTERGENIC
SBS Chr5 26978084 G-A Hetero INTERGENIC
SBS Chr6 12571044 G-T Homo NON_SYNONYMOUS_CODING OsKitaake06g134200
SBS Chr7 18864556 A-T Homo INTERGENIC
SBS Chr7 26302106 T-C Homo INTERGENIC
SBS Chr8 10823738 C-T Homo INTERGENIC
SBS Chr8 10844113 C-T Homo INTERGENIC
SBS Chr8 16411284 C-T Homo INTERGENIC
SBS Chr9 4706751 C-T Homo INTERGENIC
SBS Chr9 4794903 G-A Hetero INTERGENIC
SBS Chr9 14297599 G-T Homo INTERGENIC
SBS Chr9 17987791 G-A Hetero INTERGENIC
SBS Chr9 20342280 G-C Homo INTRON
SBS Chr12 7769133 G-A Hetero INTERGENIC
SBS Chr12 20870593 G-A Hetero INTERGENIC

Deletions: 13

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr5 458634 458644 10
Deletion Chr8 813501 813511 10
Deletion Chr10 1362737 1362738 1
Deletion Chr1 4059377 4059497 120
Deletion Chr4 5549163 5549531 368
Deletion Chr12 8162245 8162255 10
Deletion Chr7 8359405 8359412 7
Deletion Chr8 9696374 9696379 5
Deletion Chr1 13156894 13156895 1
Deletion Chr11 19203538 19203539 1
Deletion Chr7 22252528 22252536 8
Deletion Chr1 26697001 26728000 30999
Deletion Chr2 29670107 29670110 3

Insertions: 1

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr3 8297934 8297937 2

Inversions: 5

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr10 4145087 4838918
Inversion Chr10 4145103 4838932
Inversion Chr12 20464386 20535925
Inversion Chr1 27636505 27663232
Inversion Chr1 27636508 27663238

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	28264122	T-C	Hetero	NON_SYNONYMOUS_CODING	OsKitaake01g274100
SBS	Chr1	28329158	G-A	Hetero	INTERGENIC
SBS	Chr1	41084052	C-T	Hetero	INTERGENIC
SBS	Chr2	12179373	G-A	Hetero	INTERGENIC
SBS	Chr2	24991840	C-T	Homo	INTERGENIC
SBS	Chr2	36628060	C-T	Homo	INTERGENIC
SBS	Chr3	16590186	A-T	Hetero	INTERGENIC
SBS	Chr3	34429636	C-A	Hetero	INTERGENIC
SBS	Chr4	35861044	G-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake04g307300
SBS	Chr5	69888	G-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake05g000600
SBS	Chr5	69890	T-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake05g000600
SBS	Chr5	6849696	T-A	Hetero	INTERGENIC
SBS	Chr5	19496666	A-C	Hetero	INTERGENIC
SBS	Chr5	26978084	G-A	Hetero	INTERGENIC
SBS	Chr6	12571044	G-T	Homo	NON_SYNONYMOUS_CODING	OsKitaake06g134200
SBS	Chr7	18864556	A-T	Homo	INTERGENIC
SBS	Chr7	26302106	T-C	Homo	INTERGENIC
SBS	Chr8	10823738	C-T	Homo	INTERGENIC
SBS	Chr8	10844113	C-T	Homo	INTERGENIC
SBS	Chr8	16411284	C-T	Homo	INTERGENIC
SBS	Chr9	4706751	C-T	Homo	INTERGENIC
SBS	Chr9	4794903	G-A	Hetero	INTERGENIC
SBS	Chr9	14297599	G-T	Homo	INTERGENIC
SBS	Chr9	17987791	G-A	Hetero	INTERGENIC
SBS	Chr9	20342280	G-C	Homo	INTRON
SBS	Chr12	7769133	G-A	Hetero	INTERGENIC
SBS	Chr12	20870593	G-A	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr5	458634	458644	10
Deletion	Chr8	813501	813511	10
Deletion	Chr10	1362737	1362738	1
Deletion	Chr1	4059377	4059497	120
Deletion	Chr4	5549163	5549531	368
Deletion	Chr12	8162245	8162255	10
Deletion	Chr7	8359405	8359412	7
Deletion	Chr8	9696374	9696379	5
Deletion	Chr1	13156894	13156895	1
Deletion	Chr11	19203538	19203539	1
Deletion	Chr7	22252528	22252536	8
Deletion	Chr1	26697001	26728000	30999
Deletion	Chr2	29670107	29670110	3

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr10	4145087	4838918
Inversion	Chr10	4145103	4838932
Inversion	Chr12	20464386	20535925
Inversion	Chr1	27636505	27663232
Inversion	Chr1	27636508	27663238

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes