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Mutant Information

Mutant Name	FN-56 [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN-56 Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 22

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 9074975 C-T Hetero INTERGENIC
SBS Chr1 25601043 T-C Hetero INTERGENIC
SBS Chr4 16502194 C-T Hetero INTRON
SBS Chr4 18053727 T-A Homo INTERGENIC
SBS Chr5 4403021 T-A Hetero INTRON
SBS Chr5 10096068 C-T Hetero INTERGENIC
SBS Chr5 10096069 C-T Hetero INTERGENIC
SBS Chr6 12249299 A-G Hetero UTR_5_PRIME
SBS Chr7 10025129 T-C Hetero INTERGENIC
SBS Chr7 12676263 A-T Hetero SYNONYMOUS_CODING
SBS Chr8 24151582 C-G Hetero INTERGENIC
SBS Chr8 24867496 G-C Homo INTERGENIC
SBS Chr8 26162232 T-G Hetero INTERGENIC
SBS Chr8 26162233 G-T Hetero INTERGENIC
SBS Chr8 26163925 G-A Hetero NON_SYNONYMOUS_CODING OsKitaake08g208400
SBS Chr9 4227700 G-A Homo SYNONYMOUS_CODING
SBS Chr9 6912817 T-A Homo INTERGENIC
SBS Chr9 19380078 T-G Hetero NON_SYNONYMOUS_CODING OsKitaake09g157500
SBS Chr10 19783824 C-T Hetero NON_SYNONYMOUS_CODING OsKitaake10g147300
SBS Chr11 1703514 C-T Hetero INTERGENIC
SBS Chr11 21603888 C-A Homo INTERGENIC
SBS Chr12 6708125 C-T Hetero NON_SYNONYMOUS_CODING OsKitaake12g076700

Deletions: 8

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr6 90225 90930 705
Deletion Chr9 93075 93079 4
Deletion Chr8 12398998 12398999 1
Deletion Chr11 16991160 16991162 2
Deletion Chr1 17528442 17528444 2
Deletion Chr5 17609704 17609705 1
Deletion Chr10 18686981 18686983 2
Deletion Chr1 23682001 23903000 220999 24

Insertions: 5

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr1 42367388 42367391 2
Insertion Chr3 16240056 16240059 2
Insertion Chr10 22990167 22990173 5 OsKitaake10g192700
Insertion Chr2 35328984 35328987 2
Insertion Chr5 30012537 30012539 1

Translocations: 3

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr12 6705577 Chr1 5692142 OsKitaake12g076700
Translocation Chr4 8241841 Chr1 25563137 2
Translocation Chr4 8242047 Chr1 25563138 2

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	9074975	C-T	Hetero	INTERGENIC
SBS	Chr1	25601043	T-C	Hetero	INTERGENIC
SBS	Chr4	16502194	C-T	Hetero	INTRON
SBS	Chr4	18053727	T-A	Homo	INTERGENIC
SBS	Chr5	4403021	T-A	Hetero	INTRON
SBS	Chr5	10096068	C-T	Hetero	INTERGENIC
SBS	Chr5	10096069	C-T	Hetero	INTERGENIC
SBS	Chr6	12249299	A-G	Hetero	UTR_5_PRIME
SBS	Chr7	10025129	T-C	Hetero	INTERGENIC
SBS	Chr7	12676263	A-T	Hetero	SYNONYMOUS_CODING
SBS	Chr8	24151582	C-G	Hetero	INTERGENIC
SBS	Chr8	24867496	G-C	Homo	INTERGENIC
SBS	Chr8	26162232	T-G	Hetero	INTERGENIC
SBS	Chr8	26162233	G-T	Hetero	INTERGENIC
SBS	Chr8	26163925	G-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake08g208400
SBS	Chr9	4227700	G-A	Homo	SYNONYMOUS_CODING
SBS	Chr9	6912817	T-A	Homo	INTERGENIC
SBS	Chr9	19380078	T-G	Hetero	NON_SYNONYMOUS_CODING	OsKitaake09g157500
SBS	Chr10	19783824	C-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake10g147300
SBS	Chr11	1703514	C-T	Hetero	INTERGENIC
SBS	Chr11	21603888	C-A	Homo	INTERGENIC
SBS	Chr12	6708125	C-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake12g076700

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr6	90225	90930	705
Deletion	Chr9	93075	93079	4
Deletion	Chr8	12398998	12398999	1
Deletion	Chr11	16991160	16991162	2
Deletion	Chr1	17528442	17528444	2
Deletion	Chr5	17609704	17609705	1
Deletion	Chr10	18686981	18686983	2
Deletion	Chr1	23682001	23903000	220999	24

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr12	6705577	Chr1	5692142	OsKitaake12g076700
Translocation	Chr4	8241841	Chr1	25563137	2
Translocation	Chr4	8242047	Chr1	25563138	2

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes