Search Kitaake

Mutant Information

Mutant Name	FN-59 [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN-59 Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 38

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 2287516 T-C Hetero INTRON
SBS Chr1 2288003 T-A Hetero INTRON
SBS Chr1 5522993 A-T Homo INTERGENIC
SBS Chr1 10185116 G-A Hetero SYNONYMOUS_CODING
SBS Chr1 21164623 A-C Hetero INTERGENIC
SBS Chr1 22103619 A-T Hetero INTERGENIC
SBS Chr1 30756744 G-A Hetero INTERGENIC
SBS Chr1 39712290 T-C Hetero INTERGENIC
SBS Chr1 40769412 G-T Hetero INTERGENIC
SBS Chr1 40769413 A-T Hetero INTERGENIC
SBS Chr2 7534357 C-T Hetero INTERGENIC
SBS Chr2 14625431 T-A Hetero INTERGENIC
SBS Chr2 16172815 C-T Hetero INTERGENIC
SBS Chr3 5435909 A-G Hetero INTRON
SBS Chr4 27547971 C-T Homo INTERGENIC
SBS Chr5 20208759 A-C Hetero INTERGENIC
SBS Chr5 29208431 T-A Hetero INTRON
SBS Chr6 12935798 C-T Hetero INTERGENIC
SBS Chr6 15084675 T-A Hetero INTERGENIC
SBS Chr6 23602991 T-C Hetero INTERGENIC
SBS Chr7 5122017 C-T Hetero INTERGENIC
SBS Chr7 15156818 C-T Hetero INTERGENIC
SBS Chr7 25001451 G-A Hetero INTERGENIC
SBS Chr8 13164616 C-T Hetero INTERGENIC
SBS Chr8 17260376 T-G Hetero INTERGENIC
SBS Chr9 1947197 C-A Homo INTERGENIC
SBS Chr9 4783705 A-G Hetero INTERGENIC
SBS Chr10 2220520 T-A Hetero INTERGENIC
SBS Chr10 10816140 G-A Hetero INTERGENIC
SBS Chr10 12893636 G-A Hetero INTERGENIC
SBS Chr11 9617552 C-G Hetero INTRON
SBS Chr11 14609522 C-A Hetero INTRON
SBS Chr11 17165665 A-G Hetero INTERGENIC
SBS Chr11 22297285 G-A Hetero INTERGENIC
SBS Chr11 26707584 C-T Hetero INTERGENIC
SBS Chr11 26862909 A-C Hetero INTERGENIC
SBS Chr12 7689462 G-T Homo INTERGENIC
SBS Chr12 10888728 T-G Hetero INTERGENIC

Deletions: 13

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr6 13902 13903 1
Deletion Chr3 5666620 5666621 1
Deletion Chr10 8678870 8679035 165
Deletion Chr2 10987065 10987156 91
Deletion Chr3 12492001 12525000 32999 5
Deletion Chr11 14023699 14023700 1
Deletion Chr7 17339001 17389000 49999 5
Deletion Chr5 20257109 20257110 1 OsKitaake05g161400
Deletion Chr3 20912795 20912799 4
Deletion Chr11 22321581 22321588 7
Deletion Chr3 25941349 25941350 1
Deletion Chr4 35925863 35925870 7
Deletion Chr1 42360681 42360683 2

Insertions: 3

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr11 26856430 26856433 2
Insertion Chr5 10944141 10944143 1
Insertion Chr12 15941367 15941369 1

Inversions: 2

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr4 11518503 11794964
Inversion Chr4 11518522 11794989

Translocations: 2

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr7 26200722 Chr2 949820 2
Translocation Chr7 26201394 Chr2 949822 2

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	2287516	T-C	Hetero	INTRON
SBS	Chr1	2288003	T-A	Hetero	INTRON
SBS	Chr1	5522993	A-T	Homo	INTERGENIC
SBS	Chr1	10185116	G-A	Hetero	SYNONYMOUS_CODING
SBS	Chr1	21164623	A-C	Hetero	INTERGENIC
SBS	Chr1	22103619	A-T	Hetero	INTERGENIC
SBS	Chr1	30756744	G-A	Hetero	INTERGENIC
SBS	Chr1	39712290	T-C	Hetero	INTERGENIC
SBS	Chr1	40769412	G-T	Hetero	INTERGENIC
SBS	Chr1	40769413	A-T	Hetero	INTERGENIC
SBS	Chr2	7534357	C-T	Hetero	INTERGENIC
SBS	Chr2	14625431	T-A	Hetero	INTERGENIC
SBS	Chr2	16172815	C-T	Hetero	INTERGENIC
SBS	Chr3	5435909	A-G	Hetero	INTRON
SBS	Chr4	27547971	C-T	Homo	INTERGENIC
SBS	Chr5	20208759	A-C	Hetero	INTERGENIC
SBS	Chr5	29208431	T-A	Hetero	INTRON
SBS	Chr6	12935798	C-T	Hetero	INTERGENIC
SBS	Chr6	15084675	T-A	Hetero	INTERGENIC
SBS	Chr6	23602991	T-C	Hetero	INTERGENIC
SBS	Chr7	5122017	C-T	Hetero	INTERGENIC
SBS	Chr7	15156818	C-T	Hetero	INTERGENIC
SBS	Chr7	25001451	G-A	Hetero	INTERGENIC
SBS	Chr8	13164616	C-T	Hetero	INTERGENIC
SBS	Chr8	17260376	T-G	Hetero	INTERGENIC
SBS	Chr9	1947197	C-A	Homo	INTERGENIC
SBS	Chr9	4783705	A-G	Hetero	INTERGENIC
SBS	Chr10	2220520	T-A	Hetero	INTERGENIC
SBS	Chr10	10816140	G-A	Hetero	INTERGENIC
SBS	Chr10	12893636	G-A	Hetero	INTERGENIC
SBS	Chr11	9617552	C-G	Hetero	INTRON
SBS	Chr11	14609522	C-A	Hetero	INTRON
SBS	Chr11	17165665	A-G	Hetero	INTERGENIC
SBS	Chr11	22297285	G-A	Hetero	INTERGENIC
SBS	Chr11	26707584	C-T	Hetero	INTERGENIC
SBS	Chr11	26862909	A-C	Hetero	INTERGENIC
SBS	Chr12	7689462	G-T	Homo	INTERGENIC
SBS	Chr12	10888728	T-G	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr6	13902	13903	1
Deletion	Chr3	5666620	5666621	1
Deletion	Chr10	8678870	8679035	165
Deletion	Chr2	10987065	10987156	91
Deletion	Chr3	12492001	12525000	32999	5
Deletion	Chr11	14023699	14023700	1
Deletion	Chr7	17339001	17389000	49999	5
Deletion	Chr5	20257109	20257110	1	OsKitaake05g161400
Deletion	Chr3	20912795	20912799	4
Deletion	Chr11	22321581	22321588	7
Deletion	Chr3	25941349	25941350	1
Deletion	Chr4	35925863	35925870	7
Deletion	Chr1	42360681	42360683	2

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr4	11518503	11794964
Inversion	Chr4	11518522	11794989

Main menu

You are here

Search Kitaake

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes