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Mutant Information

Mutant Name	FN-61 [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN-61 Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 29

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 11337830 A-G Hetero INTRON
SBS Chr1 17391415 G-T Hetero INTERGENIC
SBS Chr1 21980311 G-A Hetero INTERGENIC
SBS Chr1 33342859 C-T Homo UTR_5_PRIME
SBS Chr1 43862587 G-A Homo INTERGENIC
SBS Chr2 170527 T-A Hetero INTRON
SBS Chr3 9706561 C-T Homo INTERGENIC
SBS Chr3 17041573 G-C Hetero INTERGENIC
SBS Chr3 29252802 T-G Hetero INTERGENIC
SBS Chr3 29347261 T-G Hetero SYNONYMOUS_CODING
SBS Chr3 35446119 A-T Hetero INTERGENIC
SBS Chr3 35446783 T-C Hetero INTERGENIC
SBS Chr4 34476962 C-T Homo INTRON
SBS Chr5 2623481 G-A Hetero INTRON
SBS Chr6 3070349 G-T Hetero INTERGENIC
SBS Chr6 13696376 T-C Homo INTRON
SBS Chr6 26641913 C-T Hetero INTERGENIC
SBS Chr6 27232754 C-T Hetero INTERGENIC
SBS Chr7 11955795 C-T Homo INTERGENIC
SBS Chr7 26414659 C-A Homo INTERGENIC
SBS Chr8 1245627 A-G Homo INTERGENIC
SBS Chr8 24535556 A-T Hetero INTERGENIC
SBS Chr9 2871767 C-A Hetero INTERGENIC
SBS Chr9 3055740 G-T Hetero INTERGENIC
SBS Chr9 10003405 T-A Homo INTERGENIC
SBS Chr9 12594906 G-C Homo NON_SYNONYMOUS_CODING OsKitaake09g083100
SBS Chr9 22074713 A-G Hetero SYNONYMOUS_CODING
SBS Chr12 22972281 T-C Homo INTERGENIC
SBS Chr12 24055089 T-A Homo INTERGENIC

Deletions: 16

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr6 5252063 5252066 3
Deletion Chr9 7448001 7502000 53999 2
Deletion Chr8 8919272 8919279 7
Deletion Chr10 9006212 9006217 5
Deletion Chr5 10304566 10304567 1
Deletion Chr8 10787850 10787942 92
Deletion Chr10 13166684 13166685 1
Deletion Chr1 14389698 14389700 2
Deletion Chr7 17746265 17746267 2
Deletion Chr2 18283929 18283930 1
Deletion Chr2 23205845 23205941 96
Deletion Chr6 23647036 23647045 9
Deletion Chr1 25535087 25535089 2
Deletion Chr3 25817320 25817323 3
Deletion Chr2 32776079 32776080 1
Deletion Chr3 36294001 36311000 16999 3

Insertions: 2

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr3 31983620 31983623 2
Insertion Chr10 5415995 5415997 1

Inversions: 3

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr9 12114584 12532495 OsKitaake09g078300
Inversion Chr9 12114596 12532507 OsKitaake09g078300
Inversion Chr1 23795406 23907503

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	11337830	A-G	Hetero	INTRON
SBS	Chr1	17391415	G-T	Hetero	INTERGENIC
SBS	Chr1	21980311	G-A	Hetero	INTERGENIC
SBS	Chr1	33342859	C-T	Homo	UTR_5_PRIME
SBS	Chr1	43862587	G-A	Homo	INTERGENIC
SBS	Chr2	170527	T-A	Hetero	INTRON
SBS	Chr3	9706561	C-T	Homo	INTERGENIC
SBS	Chr3	17041573	G-C	Hetero	INTERGENIC
SBS	Chr3	29252802	T-G	Hetero	INTERGENIC
SBS	Chr3	29347261	T-G	Hetero	SYNONYMOUS_CODING
SBS	Chr3	35446119	A-T	Hetero	INTERGENIC
SBS	Chr3	35446783	T-C	Hetero	INTERGENIC
SBS	Chr4	34476962	C-T	Homo	INTRON
SBS	Chr5	2623481	G-A	Hetero	INTRON
SBS	Chr6	3070349	G-T	Hetero	INTERGENIC
SBS	Chr6	13696376	T-C	Homo	INTRON
SBS	Chr6	26641913	C-T	Hetero	INTERGENIC
SBS	Chr6	27232754	C-T	Hetero	INTERGENIC
SBS	Chr7	11955795	C-T	Homo	INTERGENIC
SBS	Chr7	26414659	C-A	Homo	INTERGENIC
SBS	Chr8	1245627	A-G	Homo	INTERGENIC
SBS	Chr8	24535556	A-T	Hetero	INTERGENIC
SBS	Chr9	2871767	C-A	Hetero	INTERGENIC
SBS	Chr9	3055740	G-T	Hetero	INTERGENIC
SBS	Chr9	10003405	T-A	Homo	INTERGENIC
SBS	Chr9	12594906	G-C	Homo	NON_SYNONYMOUS_CODING	OsKitaake09g083100
SBS	Chr9	22074713	A-G	Hetero	SYNONYMOUS_CODING
SBS	Chr12	22972281	T-C	Homo	INTERGENIC
SBS	Chr12	24055089	T-A	Homo	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr6	5252063	5252066	3
Deletion	Chr9	7448001	7502000	53999	2
Deletion	Chr8	8919272	8919279	7
Deletion	Chr10	9006212	9006217	5
Deletion	Chr5	10304566	10304567	1
Deletion	Chr8	10787850	10787942	92
Deletion	Chr10	13166684	13166685	1
Deletion	Chr1	14389698	14389700	2
Deletion	Chr7	17746265	17746267	2
Deletion	Chr2	18283929	18283930	1
Deletion	Chr2	23205845	23205941	96
Deletion	Chr6	23647036	23647045	9
Deletion	Chr1	25535087	25535089	2
Deletion	Chr3	25817320	25817323	3
Deletion	Chr2	32776079	32776080	1
Deletion	Chr3	36294001	36311000	16999	3

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr9	12114584	12532495	OsKitaake09g078300
Inversion	Chr9	12114596	12532507	OsKitaake09g078300
Inversion	Chr1	23795406	23907503

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes