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Mutant Information

Mutant Name	FN-62 [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN-62 Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 20

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr2 30738493 G-C Hetero INTERGENIC
SBS Chr4 24818310 C-T Hetero INTERGENIC
SBS Chr4 28650134 A-G Hetero INTERGENIC
SBS Chr4 30218143 C-T Hetero INTRON
SBS Chr5 23521562 A-G Hetero INTERGENIC
SBS Chr5 23943450 T-C Hetero INTERGENIC
SBS Chr5 23943480 G-T Hetero INTERGENIC
SBS Chr5 30166877 T-A Hetero INTERGENIC
SBS Chr6 2585040 C-G Hetero INTERGENIC
SBS Chr6 2978533 A-G Hetero INTERGENIC
SBS Chr6 8004002 A-G Homo INTRON
SBS Chr6 14460275 A-G Homo INTERGENIC
SBS Chr6 18806565 C-T Homo INTERGENIC
SBS Chr6 28666717 A-G Homo INTERGENIC
SBS Chr8 22640085 G-T Homo INTERGENIC
SBS Chr9 19781013 C-G Homo NON_SYNONYMOUS_CODING OsKitaake09g163500
SBS Chr9 22409574 T-G Homo INTERGENIC
SBS Chr9 22409577 A-T Homo INTERGENIC
SBS Chr10 13063592 A-G Hetero INTRON
SBS Chr12 20977474 C-T Hetero INTERGENIC

Deletions: 15

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr11 1333547 1333552 5
Deletion Chr9 5716447 5716538 91
Deletion Chr8 6614688 6614700 12
Deletion Chr9 7406001 7475000 68999 2
Deletion Chr7 8259425 8259469 44
Deletion Chr6 9309155 9309160 5
Deletion Chr5 10765972 10765974 2
Deletion Chr11 11446776 11446786 10
Deletion Chr12 13229318 13229320 2
Deletion Chr4 17595665 17595666 1
Deletion Chr2 19912215 19912221 6
Deletion Chr9 22257296 22257307 11
Deletion Chr6 23410750 23410753 3
Deletion Chr6 27633377 27633382 5
Deletion Chr2 35332312 35332322 10

Insertions: 4

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr1 37336729 37336734 4
Insertion Chr6 2182194 2182196 1 OsKitaake06g027900
Insertion Chr11 19899294 19899297 2
Insertion Chr12 5268105 5268109 3

Translocations: 1

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr10 18759014 Chr7 23926504 2

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr2	30738493	G-C	Hetero	INTERGENIC
SBS	Chr4	24818310	C-T	Hetero	INTERGENIC
SBS	Chr4	28650134	A-G	Hetero	INTERGENIC
SBS	Chr4	30218143	C-T	Hetero	INTRON
SBS	Chr5	23521562	A-G	Hetero	INTERGENIC
SBS	Chr5	23943450	T-C	Hetero	INTERGENIC
SBS	Chr5	23943480	G-T	Hetero	INTERGENIC
SBS	Chr5	30166877	T-A	Hetero	INTERGENIC
SBS	Chr6	2585040	C-G	Hetero	INTERGENIC
SBS	Chr6	2978533	A-G	Hetero	INTERGENIC
SBS	Chr6	8004002	A-G	Homo	INTRON
SBS	Chr6	14460275	A-G	Homo	INTERGENIC
SBS	Chr6	18806565	C-T	Homo	INTERGENIC
SBS	Chr6	28666717	A-G	Homo	INTERGENIC
SBS	Chr8	22640085	G-T	Homo	INTERGENIC
SBS	Chr9	19781013	C-G	Homo	NON_SYNONYMOUS_CODING	OsKitaake09g163500
SBS	Chr9	22409574	T-G	Homo	INTERGENIC
SBS	Chr9	22409577	A-T	Homo	INTERGENIC
SBS	Chr10	13063592	A-G	Hetero	INTRON
SBS	Chr12	20977474	C-T	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr11	1333547	1333552	5
Deletion	Chr9	5716447	5716538	91
Deletion	Chr8	6614688	6614700	12
Deletion	Chr9	7406001	7475000	68999	2
Deletion	Chr7	8259425	8259469	44
Deletion	Chr6	9309155	9309160	5
Deletion	Chr5	10765972	10765974	2
Deletion	Chr11	11446776	11446786	10
Deletion	Chr12	13229318	13229320	2
Deletion	Chr4	17595665	17595666	1
Deletion	Chr2	19912215	19912221	6
Deletion	Chr9	22257296	22257307	11
Deletion	Chr6	23410750	23410753	3
Deletion	Chr6	27633377	27633382	5
Deletion	Chr2	35332312	35332322	10

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr10	18759014	Chr7	23926504	2

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes