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Mutant Information

Mutant Name	FN-63 [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN-63 Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 28

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr2 2292365 G-A Hetero INTERGENIC
SBS Chr2 3794711 A-G Hetero INTERGENIC
SBS Chr2 6332826 C-T Hetero INTERGENIC
SBS Chr2 25661528 A-T Homo INTRON
SBS Chr3 23791540 G-A Homo INTERGENIC
SBS Chr3 26257498 G-C Hetero INTERGENIC
SBS Chr3 29138032 G-A Homo INTERGENIC
SBS Chr3 34965298 T-G Homo INTERGENIC
SBS Chr4 3566317 G-T Hetero INTERGENIC
SBS Chr4 4734215 C-T Hetero INTERGENIC
SBS Chr4 4931132 C-T Hetero INTERGENIC
SBS Chr4 10398510 A-G Homo INTRON
SBS Chr4 24832381 A-T Homo INTERGENIC
SBS Chr4 30795104 C-T Hetero NON_SYNONYMOUS_CODING OsKitaake04g238000
SBS Chr4 33177609 C-A Hetero INTERGENIC
SBS Chr5 29899842 T-A Hetero INTRON
SBS Chr6 4297794 T-G Hetero INTERGENIC
SBS Chr6 16848371 C-T Hetero INTRON
SBS Chr7 17543084 G-A Hetero INTERGENIC
SBS Chr7 21538085 T-C Homo INTRON
SBS Chr7 22434173 C-G Hetero INTRON
SBS Chr8 1774965 C-T Hetero INTERGENIC
SBS Chr8 25372609 A-G Homo INTERGENIC
SBS Chr10 7625595 G-C Hetero INTERGENIC
SBS Chr11 2799372 C-T Homo START_GAINED
SBS Chr11 11960885 G-A Homo INTERGENIC
SBS Chr11 19935034 G-A Hetero INTERGENIC
SBS Chr12 10106778 A-G Hetero INTERGENIC

Deletions: 15

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr6 276190 276195 5
Deletion Chr4 3108281 3108296 15
Deletion Chr6 3402724 3402725 1
Deletion Chr1 6146149 6146159 10
Deletion Chr2 6333027 6333032 5
Deletion Chr8 6445100 6445101 1
Deletion Chr10 7731886 7731888 2
Deletion Chr2 9048001 9208000 159999 20
Deletion Chr2 9411044 9411049 5
Deletion Chr1 9785426 9785436 10
Deletion Chr6 13582001 13605000 22999 2
Deletion Chr9 14285865 14285879 14
Deletion Chr9 20894767 20894769 2
Deletion Chr7 23200546 23200554 8
Deletion Chr3 35224326 35224332 6

Insertions: 1

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr8 9965568 9965570 1

Inversions: 3

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr12 4503482 4540808 OsKitaake12g060400
Inversion Chr12 4503500 4540815 OsKitaake12g060400
Inversion Chr2 8861953 9014712 2

Translocations: 6

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr10 3709263 Chr2 7702780 OsKitaake02g100700
Translocation Chr10 3709485 Chr2 7703680 OsKitaake02g100700
Translocation Chr2 7702778 Chr1 6670700 2
Translocation Chr2 7703678 Chr1 6668614 2
Translocation Chr2 10327896 Chr1 6029943 2
Translocation Chr4 31595443 Chr1 41332643 OsKitaake04g249300

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr2	2292365	G-A	Hetero	INTERGENIC
SBS	Chr2	3794711	A-G	Hetero	INTERGENIC
SBS	Chr2	6332826	C-T	Hetero	INTERGENIC
SBS	Chr2	25661528	A-T	Homo	INTRON
SBS	Chr3	23791540	G-A	Homo	INTERGENIC
SBS	Chr3	26257498	G-C	Hetero	INTERGENIC
SBS	Chr3	29138032	G-A	Homo	INTERGENIC
SBS	Chr3	34965298	T-G	Homo	INTERGENIC
SBS	Chr4	3566317	G-T	Hetero	INTERGENIC
SBS	Chr4	4734215	C-T	Hetero	INTERGENIC
SBS	Chr4	4931132	C-T	Hetero	INTERGENIC
SBS	Chr4	10398510	A-G	Homo	INTRON
SBS	Chr4	24832381	A-T	Homo	INTERGENIC
SBS	Chr4	30795104	C-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake04g238000
SBS	Chr4	33177609	C-A	Hetero	INTERGENIC
SBS	Chr5	29899842	T-A	Hetero	INTRON
SBS	Chr6	4297794	T-G	Hetero	INTERGENIC
SBS	Chr6	16848371	C-T	Hetero	INTRON
SBS	Chr7	17543084	G-A	Hetero	INTERGENIC
SBS	Chr7	21538085	T-C	Homo	INTRON
SBS	Chr7	22434173	C-G	Hetero	INTRON
SBS	Chr8	1774965	C-T	Hetero	INTERGENIC
SBS	Chr8	25372609	A-G	Homo	INTERGENIC
SBS	Chr10	7625595	G-C	Hetero	INTERGENIC
SBS	Chr11	2799372	C-T	Homo	START_GAINED
SBS	Chr11	11960885	G-A	Homo	INTERGENIC
SBS	Chr11	19935034	G-A	Hetero	INTERGENIC
SBS	Chr12	10106778	A-G	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr6	276190	276195	5
Deletion	Chr4	3108281	3108296	15
Deletion	Chr6	3402724	3402725	1
Deletion	Chr1	6146149	6146159	10
Deletion	Chr2	6333027	6333032	5
Deletion	Chr8	6445100	6445101	1
Deletion	Chr10	7731886	7731888	2
Deletion	Chr2	9048001	9208000	159999	20
Deletion	Chr2	9411044	9411049	5
Deletion	Chr1	9785426	9785436	10
Deletion	Chr6	13582001	13605000	22999	2
Deletion	Chr9	14285865	14285879	14
Deletion	Chr9	20894767	20894769	2
Deletion	Chr7	23200546	23200554	8
Deletion	Chr3	35224326	35224332	6

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr12	4503482	4540808	OsKitaake12g060400
Inversion	Chr12	4503500	4540815	OsKitaake12g060400
Inversion	Chr2	8861953	9014712	2

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes