Search Kitaake
| Mutant Information |
|---|
| Mutant Name | FN-64 [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN-64 Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 25
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 43938415 | T-C | Hetero | NON_SYNONYMOUS_CODING | OsKitaake01g490000 |
| SBS | Chr2 | 17232491 | C-T | Homo | NON_SYNONYMOUS_CODING | OsKitaake02g173600 |
| SBS | Chr2 | 26769810 | G-A | Homo | INTERGENIC | |
| SBS | Chr2 | 27787642 | A-G | Homo | INTRON | |
| SBS | Chr2 | 27789294 | G-C | Homo | INTRON | |
| SBS | Chr3 | 6725008 | C-T | Hetero | INTERGENIC | |
| SBS | Chr3 | 31866364 | A-G | Homo | INTERGENIC | |
| SBS | Chr4 | 9319329 | G-A | Homo | INTERGENIC | |
| SBS | Chr4 | 16910769 | G-A | Hetero | INTERGENIC | |
| SBS | Chr4 | 23429028 | C-T | Hetero | INTERGENIC | |
| SBS | Chr4 | 29072544 | A-G | Hetero | NON_SYNONYMOUS_CODING | OsKitaake04g219750 |
| SBS | Chr5 | 7876656 | G-A | Hetero | INTERGENIC | |
| SBS | Chr6 | 5198307 | G-A | Hetero | INTERGENIC | |
| SBS | Chr6 | 16819660 | A-T | Homo | INTERGENIC | |
| SBS | Chr8 | 5958751 | C-T | Hetero | INTRON | |
| SBS | Chr10 | 3248946 | C-T | Homo | INTERGENIC | |
| SBS | Chr10 | 4231843 | T-C | Hetero | INTERGENIC | |
| SBS | Chr10 | 15226448 | C-T | Hetero | INTERGENIC | |
| SBS | Chr10 | 15226449 | A-T | Hetero | INTERGENIC | |
| SBS | Chr10 | 23918403 | G-C | Homo | NON_SYNONYMOUS_CODING | OsKitaake10g206600 |
| SBS | Chr11 | 4184538 | G-A | Hetero | INTRON | |
| SBS | Chr11 | 9788404 | C-T | Hetero | INTRON | |
| SBS | Chr11 | 20340088 | G-A | Homo | INTERGENIC | |
| SBS | Chr12 | 3582418 | G-T | Hetero | INTERGENIC | |
| SBS | Chr12 | 7463714 | A-T | Hetero | INTERGENIC |
Deletions: 9
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr11 | 1384838 | 1384842 | 4 | |
| Deletion | Chr1 | 7575761 | 7575822 | 61 | |
| Deletion | Chr4 | 7932001 | 7979000 | 46999 | 2 |
| Deletion | Chr1 | 12237432 | 12237435 | 3 | |
| Deletion | Chr9 | 13094722 | 13094723 | 1 | |
| Deletion | Chr1 | 13580001 | 13678000 | 97999 | 9 |
| Deletion | Chr6 | 20622542 | 20622544 | 2 | |
| Deletion | Chr12 | 21226985 | 21226988 | 3 | |
| Deletion | Chr4 | 22297365 | 22297483 | 118 | OsKitaake04g129975 |
Insertions: 3
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Insertion | Chr6 | 5005486 | 5005489 | 2 | |
| Insertion | Chr3 | 20050183 | 20050185 | 1 | |
| Insertion | Chr8 | 1396065 | 1396067 | 1 |
Inversions: 1
Variant Type |
Chromosome |
Position 1 |
Position 2 |
Number of Genes |
| Inversion | Chr4 | 7976907 | 8060235 | OsKitaake04g041500 |