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Mutant Information

Mutant Name	FN-65 [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN-65 Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 22

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 10296884 T-C Homo INTERGENIC
SBS Chr2 6482464 G-A Hetero INTRON
SBS Chr3 6799638 C-T Hetero START_GAINED
SBS Chr3 8815880 T-A Hetero INTERGENIC
SBS Chr3 10356704 G-A Homo INTERGENIC
SBS Chr4 18516488 C-T Hetero INTERGENIC
SBS Chr4 27757245 T-G Homo INTRON
SBS Chr5 17035407 A-G Hetero INTERGENIC
SBS Chr6 8631897 T-G Hetero INTERGENIC
SBS Chr7 6538533 T-A Hetero INTERGENIC
SBS Chr7 14592833 A-T Hetero INTERGENIC
SBS Chr7 16128043 T-C Hetero INTERGENIC
SBS Chr8 5909937 T-G Hetero NON_SYNONYMOUS_CODING OsKitaake08g064200
SBS Chr8 11042537 G-T Hetero INTERGENIC
SBS Chr8 16433163 G-A Hetero INTERGENIC
SBS Chr8 24036810 C-A Homo NON_SYNONYMOUS_CODING OsKitaake08g185400
SBS Chr9 2318595 T-C Hetero INTERGENIC
SBS Chr12 919716 A-T Hetero UTR_3_PRIME
SBS Chr12 1417925 T-C Hetero INTRON
SBS Chr12 1887882 A-G Hetero INTRON
SBS Chr12 25454295 C-T Hetero INTERGENIC
SBS Chr12 26050891 A-G Homo INTERGENIC

Deletions: 12

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr8 2816101 2816102 1
Deletion Chr10 4698336 4698347 11
Deletion Chr9 6463416 6463417 1
Deletion Chr5 10119539 10119541 2 OsKitaake05g089901
Deletion Chr11 16229053 16229055 2
Deletion Chr6 16357974 16357977 3
Deletion Chr12 16446272 16446278 6
Deletion Chr4 23115115 23115116 1 OsKitaake04g140900
Deletion Chr3 25029581 25029582 1
Deletion Chr12 26332646 26332649 3
Deletion Chr1 26707612 26707621 9
Deletion Chr3 28463001 28483000 19999 3

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	10296884	T-C	Homo	INTERGENIC
SBS	Chr2	6482464	G-A	Hetero	INTRON
SBS	Chr3	6799638	C-T	Hetero	START_GAINED
SBS	Chr3	8815880	T-A	Hetero	INTERGENIC
SBS	Chr3	10356704	G-A	Homo	INTERGENIC
SBS	Chr4	18516488	C-T	Hetero	INTERGENIC
SBS	Chr4	27757245	T-G	Homo	INTRON
SBS	Chr5	17035407	A-G	Hetero	INTERGENIC
SBS	Chr6	8631897	T-G	Hetero	INTERGENIC
SBS	Chr7	6538533	T-A	Hetero	INTERGENIC
SBS	Chr7	14592833	A-T	Hetero	INTERGENIC
SBS	Chr7	16128043	T-C	Hetero	INTERGENIC
SBS	Chr8	5909937	T-G	Hetero	NON_SYNONYMOUS_CODING	OsKitaake08g064200
SBS	Chr8	11042537	G-T	Hetero	INTERGENIC
SBS	Chr8	16433163	G-A	Hetero	INTERGENIC
SBS	Chr8	24036810	C-A	Homo	NON_SYNONYMOUS_CODING	OsKitaake08g185400
SBS	Chr9	2318595	T-C	Hetero	INTERGENIC
SBS	Chr12	919716	A-T	Hetero	UTR_3_PRIME
SBS	Chr12	1417925	T-C	Hetero	INTRON
SBS	Chr12	1887882	A-G	Hetero	INTRON
SBS	Chr12	25454295	C-T	Hetero	INTERGENIC
SBS	Chr12	26050891	A-G	Homo	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr8	2816101	2816102	1
Deletion	Chr10	4698336	4698347	11
Deletion	Chr9	6463416	6463417	1
Deletion	Chr5	10119539	10119541	2	OsKitaake05g089901
Deletion	Chr11	16229053	16229055	2
Deletion	Chr6	16357974	16357977	3
Deletion	Chr12	16446272	16446278	6
Deletion	Chr4	23115115	23115116	1	OsKitaake04g140900
Deletion	Chr3	25029581	25029582	1
Deletion	Chr12	26332646	26332649	3
Deletion	Chr1	26707612	26707621	9
Deletion	Chr3	28463001	28483000	19999	3

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes