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| Mutant Information |
|---|
| Mutant Name | FN-66 [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN-66 Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 28
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 35143196 | A-C | Hetero | INTERGENIC | |
| SBS | Chr2 | 10280343 | T-A | Homo | INTERGENIC | |
| SBS | Chr3 | 36538371 | A-G | Hetero | NON_SYNONYMOUS_CODING | OsKitaake03g406200 |
| SBS | Chr4 | 9073411 | C-T | Homo | INTERGENIC | |
| SBS | Chr4 | 11403609 | C-T | Homo | INTERGENIC | |
| SBS | Chr4 | 20051419 | C-T | Homo | INTRON | |
| SBS | Chr4 | 23947973 | A-T | Homo | INTRON | |
| SBS | Chr5 | 14493360 | G-A | Hetero | INTERGENIC | |
| SBS | Chr5 | 19459725 | A-C | Hetero | INTERGENIC | |
| SBS | Chr5 | 24472149 | G-C | Hetero | SYNONYMOUS_CODING | |
| SBS | Chr6 | 19836266 | G-A | Homo | INTERGENIC | |
| SBS | Chr6 | 25377354 | G-A | Homo | INTERGENIC | |
| SBS | Chr6 | 27419829 | T-G | Hetero | INTRON | |
| SBS | Chr7 | 10348964 | C-T | Homo | INTERGENIC | |
| SBS | Chr7 | 20778949 | C-G | Hetero | NON_SYNONYMOUS_CODING | OsKitaake07g170900 |
| SBS | Chr9 | 4089512 | C-T | Homo | INTERGENIC | |
| SBS | Chr9 | 6545056 | A-T | Homo | INTERGENIC | |
| SBS | Chr9 | 8324567 | A-G | Hetero | INTERGENIC | |
| SBS | Chr9 | 20281589 | C-T | Homo | INTERGENIC | |
| SBS | Chr10 | 10668877 | C-T | Homo | INTERGENIC | |
| SBS | Chr10 | 17533514 | G-T | Hetero | INTRON | |
| SBS | Chr10 | 22978094 | A-G | Hetero | INTERGENIC | |
| SBS | Chr11 | 15029288 | A-T | Homo | INTRON | |
| SBS | Chr11 | 18161633 | T-C | Homo | INTRON | |
| SBS | Chr11 | 26555009 | A-G | Homo | INTERGENIC | |
| SBS | Chr12 | 13630299 | C-T | Hetero | INTERGENIC | |
| SBS | Chr12 | 16742844 | G-A | Homo | INTERGENIC | |
| SBS | Chr12 | 17294264 | G-T | Homo | INTERGENIC |
Deletions: 18
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr2 | 1218761 | 1218771 | 10 | |
| Deletion | Chr3 | 1255456 | 1255458 | 2 | |
| Deletion | Chr4 | 2168206 | 2168207 | 1 | |
| Deletion | Chr1 | 2788794 | 2788795 | 1 | |
| Deletion | Chr6 | 10103979 | 10103980 | 1 | |
| Deletion | Chr3 | 10318543 | 10318562 | 19 | |
| Deletion | Chr4 | 12545685 | 12545686 | 1 | |
| Deletion | Chr10 | 13391073 | 13391075 | 2 | |
| Deletion | Chr3 | 20337876 | 20337877 | 1 | |
| Deletion | Chr6 | 21271616 | 21271617 | 1 | OsKitaake06g188500 |
| Deletion | Chr2 | 22434001 | 22505000 | 70999 | 12 |
| Deletion | Chr7 | 22588681 | 22588749 | 68 | |
| Deletion | Chr12 | 24015001 | 24302000 | 286999 | 25 |
| Deletion | Chr5 | 24355001 | 24414000 | 58999 | 11 |
| Deletion | Chr1 | 26009253 | 26009256 | 3 | |
| Deletion | Chr11 | 26200001 | 26236000 | 35999 | 5 |
| Deletion | Chr8 | 28266007 | 28266008 | 1 | |
| Deletion | Chr2 | 29914151 | 29914152 | 1 |
Insertions: 1
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Insertion | Chr4 | 19570406 | 19570413 | 6 |
Inversions: 3
Variant Type |
Chromosome |
Position 1 |
Position 2 |
Number of Genes |
| Inversion | Chr11 | 16875921 | 17495502 | |
| Inversion | Chr2 | 21303496 | 21816771 | |
| Inversion | Chr2 | 21303508 | 21816774 |