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Mutant Information

Mutant Name	FN-67 [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN-67 Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 27

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 331210 A-G Hetero INTERGENIC
SBS Chr1 9353991 G-A Homo INTRON
SBS Chr1 30337034 G-A Homo INTERGENIC
SBS Chr1 32518149 C-T Hetero INTERGENIC
SBS Chr1 41781379 G-C Hetero UTR_3_PRIME
SBS Chr2 6674102 T-C Homo INTERGENIC
SBS Chr3 8659708 G-A Hetero UTR_5_PRIME
SBS Chr3 20763256 G-A Hetero INTERGENIC
SBS Chr3 27884422 G-A Hetero INTERGENIC
SBS Chr4 14387175 C-T Hetero UTR_3_PRIME
SBS Chr4 16124380 T-C Hetero INTERGENIC
SBS Chr5 4882674 A-T Hetero INTERGENIC
SBS Chr5 26374202 C-A Homo INTERGENIC
SBS Chr6 16576805 C-T Hetero INTERGENIC
SBS Chr7 10619015 C-T Homo INTERGENIC
SBS Chr7 13600987 G-A Homo INTERGENIC
SBS Chr7 13600988 C-A Homo INTERGENIC
SBS Chr7 13600990 C-T Homo INTERGENIC
SBS Chr7 15951281 C-T Homo INTERGENIC
SBS Chr7 28802870 G-A Hetero INTERGENIC
SBS Chr8 8792438 G-A Hetero INTERGENIC
SBS Chr9 4017730 C-G Hetero INTERGENIC
SBS Chr10 1899623 A-G Hetero INTERGENIC
SBS Chr11 26623847 T-G Hetero NON_SYNONYMOUS_CODING OsKitaake11g216500
SBS Chr11 29304447 G-A Hetero INTERGENIC
SBS Chr12 8771332 G-A Hetero INTERGENIC
SBS Chr12 9302872 G-A Hetero INTERGENIC

Deletions: 21

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr7 235647 235651 4
Deletion Chr3 409104 409106 2
Deletion Chr10 1293642 1293643 1
Deletion Chr9 2755373 2755374 1
Deletion Chr9 5354055 5354061 6
Deletion Chr5 12285101 12285109 8
Deletion Chr7 13526474 13526479 5 OsKitaake07g118833
Deletion Chr5 17063457 17063462 5
Deletion Chr7 19292168 19292172 4
Deletion Chr12 19311780 19311865 85
Deletion Chr3 22461585 22461756 171
Deletion Chr7 22725556 22725559 3
Deletion Chr6 23584440 23584441 1
Deletion Chr7 24674622 24674624 2
Deletion Chr11 26492001 26521000 28999 2
Deletion Chr6 26613553 26613555 2
Deletion Chr8 28921346 28921355 9
Deletion Chr4 35515130 35515134 4
Deletion Chr1 37868726 37868728 2
Deletion Chr1 38198609 38198618 9
Deletion Chr1 43079542 43079545 3

Insertions: 4

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr2 3226702 3226705 2
Insertion Chr2 33823333 33823336 2
Insertion Chr1 14454429 14454431 1
Insertion Chr6 10871159 10871162 2 OsKitaake06g121250

Inversions: 4

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr2 1432453 1432706
Inversion Chr6 16741380 16962394
Inversion Chr6 16741432 16962401
Inversion Chr10 17809806 17809932 OsKitaake10g123300

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	331210	A-G	Hetero	INTERGENIC
SBS	Chr1	9353991	G-A	Homo	INTRON
SBS	Chr1	30337034	G-A	Homo	INTERGENIC
SBS	Chr1	32518149	C-T	Hetero	INTERGENIC
SBS	Chr1	41781379	G-C	Hetero	UTR_3_PRIME
SBS	Chr2	6674102	T-C	Homo	INTERGENIC
SBS	Chr3	8659708	G-A	Hetero	UTR_5_PRIME
SBS	Chr3	20763256	G-A	Hetero	INTERGENIC
SBS	Chr3	27884422	G-A	Hetero	INTERGENIC
SBS	Chr4	14387175	C-T	Hetero	UTR_3_PRIME
SBS	Chr4	16124380	T-C	Hetero	INTERGENIC
SBS	Chr5	4882674	A-T	Hetero	INTERGENIC
SBS	Chr5	26374202	C-A	Homo	INTERGENIC
SBS	Chr6	16576805	C-T	Hetero	INTERGENIC
SBS	Chr7	10619015	C-T	Homo	INTERGENIC
SBS	Chr7	13600987	G-A	Homo	INTERGENIC
SBS	Chr7	13600988	C-A	Homo	INTERGENIC
SBS	Chr7	13600990	C-T	Homo	INTERGENIC
SBS	Chr7	15951281	C-T	Homo	INTERGENIC
SBS	Chr7	28802870	G-A	Hetero	INTERGENIC
SBS	Chr8	8792438	G-A	Hetero	INTERGENIC
SBS	Chr9	4017730	C-G	Hetero	INTERGENIC
SBS	Chr10	1899623	A-G	Hetero	INTERGENIC
SBS	Chr11	26623847	T-G	Hetero	NON_SYNONYMOUS_CODING	OsKitaake11g216500
SBS	Chr11	29304447	G-A	Hetero	INTERGENIC
SBS	Chr12	8771332	G-A	Hetero	INTERGENIC
SBS	Chr12	9302872	G-A	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr7	235647	235651	4
Deletion	Chr3	409104	409106	2
Deletion	Chr10	1293642	1293643	1
Deletion	Chr9	2755373	2755374	1
Deletion	Chr9	5354055	5354061	6
Deletion	Chr5	12285101	12285109	8
Deletion	Chr7	13526474	13526479	5	OsKitaake07g118833
Deletion	Chr5	17063457	17063462	5
Deletion	Chr7	19292168	19292172	4
Deletion	Chr12	19311780	19311865	85
Deletion	Chr3	22461585	22461756	171
Deletion	Chr7	22725556	22725559	3
Deletion	Chr6	23584440	23584441	1
Deletion	Chr7	24674622	24674624	2
Deletion	Chr11	26492001	26521000	28999	2
Deletion	Chr6	26613553	26613555	2
Deletion	Chr8	28921346	28921355	9
Deletion	Chr4	35515130	35515134	4
Deletion	Chr1	37868726	37868728	2
Deletion	Chr1	38198609	38198618	9
Deletion	Chr1	43079542	43079545	3

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr2	1432453	1432706
Inversion	Chr6	16741380	16962394
Inversion	Chr6	16741432	16962401
Inversion	Chr10	17809806	17809932	OsKitaake10g123300

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes