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Mutant Information

Mutant Name	FN-68 [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN-68 Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 34

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 567558 A-C Hetero INTRON
SBS Chr1 4053736 A-C Hetero INTERGENIC
SBS Chr1 24086588 A-C Homo INTRON
SBS Chr1 25163035 G-A Hetero INTERGENIC
SBS Chr1 33081332 C-T Hetero INTERGENIC
SBS Chr1 41581207 C-T Hetero INTERGENIC
SBS Chr2 14552758 C-T Hetero INTERGENIC
SBS Chr2 17919922 G-T Homo INTERGENIC
SBS Chr3 12672932 T-A Hetero INTRON
SBS Chr3 26850329 T-C Hetero INTRON
SBS Chr4 29705353 T-C Hetero INTRON
SBS Chr4 33091813 A-G Homo INTERGENIC
SBS Chr5 9251123 A-T Hetero INTERGENIC
SBS Chr5 12924416 C-T Hetero INTERGENIC
SBS Chr5 14998820 A-G Hetero INTERGENIC
SBS Chr6 2628429 T-C Hetero SYNONYMOUS_CODING
SBS Chr7 527011 G-A Homo INTERGENIC
SBS Chr7 9078747 C-T Hetero INTERGENIC
SBS Chr8 5758755 C-T Hetero INTRON
SBS Chr8 25271376 C-A Homo INTERGENIC
SBS Chr8 27190949 T-C Hetero UTR_3_PRIME
SBS Chr10 321655 A-T Hetero INTERGENIC
SBS Chr10 7540371 T-C Homo INTERGENIC
SBS Chr10 9554725 T-A Homo INTRON
SBS Chr10 9774581 A-G Homo INTERGENIC
SBS Chr10 11020339 G-A Hetero INTERGENIC
SBS Chr11 1987132 G-A Homo INTERGENIC
SBS Chr11 5636482 G-A Hetero INTERGENIC
SBS Chr11 10950768 G-A Hetero INTERGENIC
SBS Chr11 10950769 T-A Hetero INTERGENIC
SBS Chr11 15939031 G-A Homo UTR_3_PRIME
SBS Chr11 16916019 T-A Hetero INTERGENIC
SBS Chr11 21426406 C-G Homo INTERGENIC
SBS Chr12 19460578 C-T Homo NON_SYNONYMOUS_CODING OsKitaake12g145800

Deletions: 21

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr4 209952 209956 4
Deletion Chr6 3405122 3405124 2 OsKitaake06g047800
Deletion Chr7 9504720 9504721 1
Deletion Chr1 11164486 11164489 3 OsKitaake01g137400
Deletion Chr11 14510127 14510498 371
Deletion Chr2 15498770 15498778 8
Deletion Chr9 15632702 15632706 4
Deletion Chr7 16180832 16180841 9
Deletion Chr2 16206089 16206093 4
Deletion Chr2 17200774 17200779 5
Deletion Chr1 17438089 17438097 8
Deletion Chr11 17591149 17591151 2
Deletion Chr11 19177695 19177701 6
Deletion Chr12 19729132 19729136 4
Deletion Chr11 20421729 20421730 1
Deletion Chr1 20556001 20596000 39999 OsKitaake01g201000
Deletion Chr3 20642329 20642336 7
Deletion Chr10 22202683 22202685 2
Deletion Chr5 28373309 28373312 3
Deletion Chr3 32930673 32930675 2
Deletion Chr1 43648093 43648095 2

Insertions: 5

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr3 15119935 15119937 1 OsKitaake03g196100
Insertion Chr4 36916118 36916121 2
Insertion Chr1 39814436 39814438 1
Insertion Chr6 15924 15927 2
Insertion Chr9 2667591 2667595 3

Inversions: 4

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr7 6382281 6385732
Inversion Chr7 6382317 6385733
Inversion Chr1 20559184 20610292
Inversion Chr1 20595482 20610290

Translocations: 2

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr8 19615727 Chr1 3548973 OsKitaake01g047300
Translocation Chr8 19615739 Chr1 3548536 OsKitaake01g047300

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	567558	A-C	Hetero	INTRON
SBS	Chr1	4053736	A-C	Hetero	INTERGENIC
SBS	Chr1	24086588	A-C	Homo	INTRON
SBS	Chr1	25163035	G-A	Hetero	INTERGENIC
SBS	Chr1	33081332	C-T	Hetero	INTERGENIC
SBS	Chr1	41581207	C-T	Hetero	INTERGENIC
SBS	Chr2	14552758	C-T	Hetero	INTERGENIC
SBS	Chr2	17919922	G-T	Homo	INTERGENIC
SBS	Chr3	12672932	T-A	Hetero	INTRON
SBS	Chr3	26850329	T-C	Hetero	INTRON
SBS	Chr4	29705353	T-C	Hetero	INTRON
SBS	Chr4	33091813	A-G	Homo	INTERGENIC
SBS	Chr5	9251123	A-T	Hetero	INTERGENIC
SBS	Chr5	12924416	C-T	Hetero	INTERGENIC
SBS	Chr5	14998820	A-G	Hetero	INTERGENIC
SBS	Chr6	2628429	T-C	Hetero	SYNONYMOUS_CODING
SBS	Chr7	527011	G-A	Homo	INTERGENIC
SBS	Chr7	9078747	C-T	Hetero	INTERGENIC
SBS	Chr8	5758755	C-T	Hetero	INTRON
SBS	Chr8	25271376	C-A	Homo	INTERGENIC
SBS	Chr8	27190949	T-C	Hetero	UTR_3_PRIME
SBS	Chr10	321655	A-T	Hetero	INTERGENIC
SBS	Chr10	7540371	T-C	Homo	INTERGENIC
SBS	Chr10	9554725	T-A	Homo	INTRON
SBS	Chr10	9774581	A-G	Homo	INTERGENIC
SBS	Chr10	11020339	G-A	Hetero	INTERGENIC
SBS	Chr11	1987132	G-A	Homo	INTERGENIC
SBS	Chr11	5636482	G-A	Hetero	INTERGENIC
SBS	Chr11	10950768	G-A	Hetero	INTERGENIC
SBS	Chr11	10950769	T-A	Hetero	INTERGENIC
SBS	Chr11	15939031	G-A	Homo	UTR_3_PRIME
SBS	Chr11	16916019	T-A	Hetero	INTERGENIC
SBS	Chr11	21426406	C-G	Homo	INTERGENIC
SBS	Chr12	19460578	C-T	Homo	NON_SYNONYMOUS_CODING	OsKitaake12g145800

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr4	209952	209956	4
Deletion	Chr6	3405122	3405124	2	OsKitaake06g047800
Deletion	Chr7	9504720	9504721	1
Deletion	Chr1	11164486	11164489	3	OsKitaake01g137400
Deletion	Chr11	14510127	14510498	371
Deletion	Chr2	15498770	15498778	8
Deletion	Chr9	15632702	15632706	4
Deletion	Chr7	16180832	16180841	9
Deletion	Chr2	16206089	16206093	4
Deletion	Chr2	17200774	17200779	5
Deletion	Chr1	17438089	17438097	8
Deletion	Chr11	17591149	17591151	2
Deletion	Chr11	19177695	19177701	6
Deletion	Chr12	19729132	19729136	4
Deletion	Chr11	20421729	20421730	1
Deletion	Chr1	20556001	20596000	39999	OsKitaake01g201000
Deletion	Chr3	20642329	20642336	7
Deletion	Chr10	22202683	22202685	2
Deletion	Chr5	28373309	28373312	3
Deletion	Chr3	32930673	32930675	2
Deletion	Chr1	43648093	43648095	2

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr7	6382281	6385732
Inversion	Chr7	6382317	6385733
Inversion	Chr1	20559184	20610292
Inversion	Chr1	20595482	20610290

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes