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| Mutant Information |
|---|
| Mutant Name | FN-69 [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN-69 Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 27
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 564412 | T-A | Hetero | INTERGENIC | |
| SBS | Chr1 | 7996135 | C-T | Hetero | INTERGENIC | |
| SBS | Chr1 | 16934531 | T-A | Hetero | INTERGENIC | |
| SBS | Chr2 | 4277504 | G-T | Homo | INTRON | |
| SBS | Chr2 | 12136548 | T-C | Homo | INTERGENIC | |
| SBS | Chr2 | 15635724 | C-T | Homo | UTR_3_PRIME | |
| SBS | Chr3 | 20582484 | T-C | Homo | INTERGENIC | |
| SBS | Chr3 | 20582485 | C-A | Homo | INTERGENIC | |
| SBS | Chr4 | 5576682 | G-A | Hetero | INTERGENIC | |
| SBS | Chr4 | 14551539 | C-T | Homo | UTR_5_PRIME | |
| SBS | Chr4 | 17172413 | T-C | Homo | INTERGENIC | |
| SBS | Chr5 | 10907295 | G-T | Hetero | INTERGENIC | |
| SBS | Chr5 | 11840301 | G-C | Hetero | INTERGENIC | |
| SBS | Chr5 | 19804301 | C-T | Hetero | INTERGENIC | |
| SBS | Chr6 | 15234145 | T-C | Hetero | INTERGENIC | |
| SBS | Chr7 | 9111768 | A-T | Homo | INTERGENIC | |
| SBS | Chr7 | 18924593 | T-C | Homo | INTERGENIC | |
| SBS | Chr7 | 19037345 | C-T | Homo | INTERGENIC | |
| SBS | Chr8 | 8346374 | C-G | Hetero | INTERGENIC | |
| SBS | Chr8 | 8783564 | T-A | Hetero | INTERGENIC | |
| SBS | Chr8 | 9023869 | C-T | Hetero | INTERGENIC | |
| SBS | Chr9 | 7790694 | A-G | Hetero | INTERGENIC | |
| SBS | Chr10 | 717325 | A-G | Hetero | INTERGENIC | |
| SBS | Chr10 | 6365474 | G-C | Homo | NON_SYNONYMOUS_CODING | OsKitaake10g043200 |
| SBS | Chr11 | 12819605 | A-G | Hetero | INTERGENIC | |
| SBS | Chr12 | 1538126 | T-G | Homo | INTERGENIC | |
| SBS | Chr12 | 18136054 | C-T | Hetero | INTRON |
Deletions: 20
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr4 | 3485440 | 3485441 | 1 | |
| Deletion | Chr12 | 6311507 | 6311509 | 2 | |
| Deletion | Chr5 | 9155544 | 9155640 | 96 | |
| Deletion | Chr8 | 10651677 | 10651682 | 5 | |
| Deletion | Chr4 | 11251841 | 11251847 | 6 | |
| Deletion | Chr6 | 16351001 | 16381000 | 29999 | 5 |
| Deletion | Chr7 | 16498437 | 16498443 | 6 | |
| Deletion | Chr12 | 17919489 | 17919599 | 110 | |
| Deletion | Chr6 | 18394946 | 18394952 | 6 | |
| Deletion | Chr5 | 18755197 | 18755222 | 25 | |
| Deletion | Chr3 | 20040046 | 20040356 | 310 | |
| Deletion | Chr5 | 20407179 | 20407192 | 13 | |
| Deletion | Chr7 | 20721539 | 20721541 | 2 | |
| Deletion | Chr2 | 22645607 | 22645609 | 2 | OsKitaake02g219900 |
| Deletion | Chr1 | 24107753 | 24107755 | 2 | OsKitaake01g231600 |
| Deletion | Chr3 | 25562905 | 25562906 | 1 | |
| Deletion | Chr6 | 25627001 | 25651000 | 23999 | 2 |
| Deletion | Chr1 | 31392337 | 31392345 | 8 | |
| Deletion | Chr2 | 31874035 | 31874036 | 1 | |
| Deletion | Chr1 | 32035801 | 32035804 | 3 |
Insertions: 3
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Insertion | Chr10 | 12017572 | 12017574 | 1 | |
| Insertion | Chr11 | 24035159 | 24035162 | 2 | |
| Insertion | Chr4 | 4414990 | 4414992 | 1 |
Inversions: 1
Variant Type |
Chromosome |
Position 1 |
Position 2 |
Number of Genes |
| Inversion | Chr4 | 8556425 | 9301605 |
Translocations: 2
Variant Type |
Chromosome |
Position 1 |
Chromosome |
Position 2 |
Number of Genes |
| Translocation | Chr10 | 18144001 | Chr7 | 5933182 | |
| Translocation | Chr10 | 18146151 | Chr7 | 5933177 |