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| Mutant Information |
|---|
| Mutant Name | FN-7 [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN-7 Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 24
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 4793815 | T-C | Hetero | INTERGENIC | |
| SBS | Chr1 | 36775083 | A-T | Hetero | INTERGENIC | |
| SBS | Chr2 | 20676107 | T-A | Hetero | INTERGENIC | |
| SBS | Chr2 | 26251774 | A-T | Hetero | INTRON | |
| SBS | Chr3 | 3731506 | G-A | Hetero | INTERGENIC | |
| SBS | Chr3 | 31857558 | G-A | Hetero | UTR_5_PRIME | |
| SBS | Chr4 | 1038001 | T-C | Homo | INTERGENIC | |
| SBS | Chr4 | 7657623 | G-A | Homo | INTRON | |
| SBS | Chr5 | 8159605 | C-T | Hetero | NON_SYNONYMOUS_CODING | OsKitaake05g080100 |
| SBS | Chr5 | 27157349 | G-T | Hetero | INTRON | |
| SBS | Chr6 | 4539799 | T-C | Hetero | INTERGENIC | |
| SBS | Chr6 | 5037802 | T-C | Hetero | INTERGENIC | |
| SBS | Chr6 | 16529371 | C-A | Homo | INTERGENIC | |
| SBS | Chr7 | 19942047 | T-C | Hetero | INTERGENIC | |
| SBS | Chr7 | 19942048 | C-A | Hetero | INTERGENIC | |
| SBS | Chr7 | 29554814 | G-A | Hetero | INTERGENIC | |
| SBS | Chr8 | 8084611 | T-C | Hetero | INTERGENIC | |
| SBS | Chr8 | 8084612 | T-G | Hetero | INTERGENIC | |
| SBS | Chr8 | 13742986 | A-T | Hetero | INTERGENIC | |
| SBS | Chr9 | 11148229 | C-T | Hetero | INTERGENIC | |
| SBS | Chr10 | 446587 | A-T | Hetero | INTERGENIC | |
| SBS | Chr10 | 21329907 | C-A | Hetero | INTERGENIC | |
| SBS | Chr10 | 21951285 | T-A | Hetero | INTERGENIC | |
| SBS | Chr12 | 16941525 | G-A | Hetero | INTERGENIC |
Deletions: 18
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr1 | 1440770 | 1440771 | 1 | |
| Deletion | Chr1 | 4774017 | 4774018 | 1 | |
| Deletion | Chr9 | 4996222 | 4996232 | 10 | |
| Deletion | Chr1 | 5139069 | 5139078 | 9 | |
| Deletion | Chr5 | 5868001 | 5889000 | 20999 | OsKitaake05g062500 |
| Deletion | Chr5 | 5898001 | 6036000 | 137999 | 5 |
| Deletion | Chr4 | 7626401 | 7626404 | 3 | |
| Deletion | Chr2 | 8395860 | 8395861 | 1 | OsKitaake02g106600 |
| Deletion | Chr11 | 11711884 | 11711885 | 1 | |
| Deletion | Chr1 | 14294402 | 14294411 | 9 | |
| Deletion | Chr10 | 16505182 | 16505200 | 18 | |
| Deletion | Chr3 | 20337876 | 20337877 | 1 | |
| Deletion | Chr4 | 24598146 | 24598148 | 2 | |
| Deletion | Chr3 | 25354000 | 25354002 | 2 | |
| Deletion | Chr3 | 26739826 | 26739827 | 1 | |
| Deletion | Chr3 | 28971790 | 28971797 | 7 | |
| Deletion | Chr2 | 35332312 | 35332322 | 10 | |
| Deletion | Chr1 | 38712086 | 38712091 | 5 |
Insertions: 4
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Insertion | Chr7 | 7833638 | 7833641 | 2 | |
| Insertion | Chr5 | 11224004 | 11224006 | 1 | |
| Insertion | Chr6 | 21129813 | 21129815 | 1 | |
| Insertion | Chr6 | 22799969 | 22799971 | 1 |
Inversions: 4
Variant Type |
Chromosome |
Position 1 |
Position 2 |
Number of Genes |
| Inversion | Chr5 | 5866214 | 6081437 | |
| Inversion | Chr5 | 6042511 | 6081466 | |
| Inversion | Chr3 | 35027091 | 35328764 | |
| Inversion | Chr3 | 35027092 | 35328815 |
Translocations: 3
Variant Type |
Chromosome |
Position 1 |
Chromosome |
Position 2 |
Number of Genes |
| Translocation | Chr8 | 1672855 | Chr5 | 6039482 | |
| Translocation | Chr8 | 1672862 | Chr5 | 6042443 | |
| Translocation | Chr5 | 6779707 | Chr3 | 28223757 | 2 |