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Mutant Information

Mutant Name	FN-70 [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN-70 Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 33

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 12886410 T-G Hetero INTRON
SBS Chr1 20274595 G-A Hetero INTERGENIC
SBS Chr1 27918230 A-T Homo INTRON
SBS Chr2 30201300 G-C Homo UTR_5_PRIME
SBS Chr3 10915347 A-C Hetero INTERGENIC
SBS Chr3 11660782 T-A Homo INTERGENIC
SBS Chr3 11660790 T-C Homo INTERGENIC
SBS Chr3 17237955 C-A Hetero INTERGENIC
SBS Chr3 26823688 T-C Homo INTERGENIC
SBS Chr3 28147618 T-A Homo INTERGENIC
SBS Chr4 1816223 C-T Hetero NON_SYNONYMOUS_CODING OsKitaake04g012000
SBS Chr4 14626487 G-T Hetero INTERGENIC
SBS Chr4 14626488 G-T Hetero INTERGENIC
SBS Chr4 20970154 G-T Homo INTERGENIC
SBS Chr4 22262512 C-T Homo INTERGENIC
SBS Chr4 27512877 C-A Homo UTR_3_PRIME
SBS Chr5 9133043 C-T Hetero INTRON
SBS Chr6 13778169 C-T Hetero INTERGENIC
SBS Chr6 24268374 G-T Hetero INTERGENIC
SBS Chr6 27602936 A-G Hetero INTERGENIC
SBS Chr7 12742090 C-T Hetero INTERGENIC
SBS Chr8 23545662 C-T Homo INTERGENIC
SBS Chr9 20844082 G-A Homo UTR_5_PRIME
SBS Chr10 12934959 T-C Hetero INTERGENIC
SBS Chr10 21309384 C-G Homo INTERGENIC
SBS Chr11 12857605 G-A Homo INTERGENIC
SBS Chr11 17813878 A-C Hetero INTERGENIC
SBS Chr11 21621646 C-G Hetero INTERGENIC
SBS Chr11 25604839 G-A Hetero INTERGENIC
SBS Chr11 26760907 C-T Hetero INTERGENIC
SBS Chr12 16568689 A-T Hetero INTERGENIC
SBS Chr12 22610289 G-A Homo NON_SYNONYMOUS_CODING OsKitaake12g177800
SBS Chr12 26826734 C-A Hetero INTERGENIC

Deletions: 21

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr1 3938240 3938250 10 OsKitaake01g053100
Deletion Chr9 4158812 4158819 7
Deletion Chr12 6918363 6918367 4
Deletion Chr7 10588587 10588588 1
Deletion Chr11 10907455 10907458 3
Deletion Chr3 11612908 11612921 13
Deletion Chr2 14747241 14747243 2
Deletion Chr3 15354471 15354480 9 OsKitaake03g198900
Deletion Chr12 16558402 16558404 2
Deletion Chr3 16584057 16584064 7 OsKitaake03g209700
Deletion Chr11 17805687 17805688 1
Deletion Chr10 19099037 19099038 1
Deletion Chr6 20210590 20210738 148
Deletion Chr7 22649652 22649654 2
Deletion Chr8 22816508 22816519 11
Deletion Chr8 24475515 24475521 6
Deletion Chr5 24574139 24574143 4
Deletion Chr7 28075428 28075449 21
Deletion Chr7 28346703 28346705 2
Deletion Chr8 28504097 28504103 6
Deletion Chr3 31293682 31293685 3

Insertions: 5

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr2 26097417 26097420 2
Insertion Chr7 15571744 15571746 1 OsKitaake07g129500
Insertion Chr10 6378166 6378169 2
Insertion Chr12 21311749 21311752 2
Insertion Chr1 25385548 25385551 2

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	12886410	T-G	Hetero	INTRON
SBS	Chr1	20274595	G-A	Hetero	INTERGENIC
SBS	Chr1	27918230	A-T	Homo	INTRON
SBS	Chr2	30201300	G-C	Homo	UTR_5_PRIME
SBS	Chr3	10915347	A-C	Hetero	INTERGENIC
SBS	Chr3	11660782	T-A	Homo	INTERGENIC
SBS	Chr3	11660790	T-C	Homo	INTERGENIC
SBS	Chr3	17237955	C-A	Hetero	INTERGENIC
SBS	Chr3	26823688	T-C	Homo	INTERGENIC
SBS	Chr3	28147618	T-A	Homo	INTERGENIC
SBS	Chr4	1816223	C-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake04g012000
SBS	Chr4	14626487	G-T	Hetero	INTERGENIC
SBS	Chr4	14626488	G-T	Hetero	INTERGENIC
SBS	Chr4	20970154	G-T	Homo	INTERGENIC
SBS	Chr4	22262512	C-T	Homo	INTERGENIC
SBS	Chr4	27512877	C-A	Homo	UTR_3_PRIME
SBS	Chr5	9133043	C-T	Hetero	INTRON
SBS	Chr6	13778169	C-T	Hetero	INTERGENIC
SBS	Chr6	24268374	G-T	Hetero	INTERGENIC
SBS	Chr6	27602936	A-G	Hetero	INTERGENIC
SBS	Chr7	12742090	C-T	Hetero	INTERGENIC
SBS	Chr8	23545662	C-T	Homo	INTERGENIC
SBS	Chr9	20844082	G-A	Homo	UTR_5_PRIME
SBS	Chr10	12934959	T-C	Hetero	INTERGENIC
SBS	Chr10	21309384	C-G	Homo	INTERGENIC
SBS	Chr11	12857605	G-A	Homo	INTERGENIC
SBS	Chr11	17813878	A-C	Hetero	INTERGENIC
SBS	Chr11	21621646	C-G	Hetero	INTERGENIC
SBS	Chr11	25604839	G-A	Hetero	INTERGENIC
SBS	Chr11	26760907	C-T	Hetero	INTERGENIC
SBS	Chr12	16568689	A-T	Hetero	INTERGENIC
SBS	Chr12	22610289	G-A	Homo	NON_SYNONYMOUS_CODING	OsKitaake12g177800
SBS	Chr12	26826734	C-A	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr1	3938240	3938250	10	OsKitaake01g053100
Deletion	Chr9	4158812	4158819	7
Deletion	Chr12	6918363	6918367	4
Deletion	Chr7	10588587	10588588	1
Deletion	Chr11	10907455	10907458	3
Deletion	Chr3	11612908	11612921	13
Deletion	Chr2	14747241	14747243	2
Deletion	Chr3	15354471	15354480	9	OsKitaake03g198900
Deletion	Chr12	16558402	16558404	2
Deletion	Chr3	16584057	16584064	7	OsKitaake03g209700
Deletion	Chr11	17805687	17805688	1
Deletion	Chr10	19099037	19099038	1
Deletion	Chr6	20210590	20210738	148
Deletion	Chr7	22649652	22649654	2
Deletion	Chr8	22816508	22816519	11
Deletion	Chr8	24475515	24475521	6
Deletion	Chr5	24574139	24574143	4
Deletion	Chr7	28075428	28075449	21
Deletion	Chr7	28346703	28346705	2
Deletion	Chr8	28504097	28504103	6
Deletion	Chr3	31293682	31293685	3

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes