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Mutant Information

Mutant Name	FN-71 [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN-71 Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 40

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 7372699 T-A Hetero INTERGENIC
SBS Chr1 24750023 G-A Hetero INTERGENIC
SBS Chr1 42187235 T-A Hetero INTERGENIC
SBS Chr2 16972553 C-T Hetero INTERGENIC
SBS Chr3 161370 G-C Hetero INTERGENIC
SBS Chr3 8630194 C-T Hetero SYNONYMOUS_CODING
SBS Chr3 8630195 C-T Hetero NON_SYNONYMOUS_CODING OsKitaake03g118400
SBS Chr3 9133204 G-A Hetero INTERGENIC
SBS Chr3 19516989 C-T Hetero INTERGENIC
SBS Chr3 31363117 T-C Homo INTERGENIC
SBS Chr4 17737760 T-C Homo INTERGENIC
SBS Chr4 20674585 A-T Homo INTERGENIC
SBS Chr4 20674586 C-T Homo INTERGENIC
SBS Chr4 26075638 C-T Homo INTERGENIC
SBS Chr5 12152179 C-T Homo INTERGENIC
SBS Chr5 21698706 C-T Hetero INTERGENIC
SBS Chr5 24358997 T-A Hetero UTR_3_PRIME
SBS Chr6 649655 C-G Homo INTERGENIC
SBS Chr6 7100758 C-T Homo INTERGENIC
SBS Chr6 16724781 T-A Hetero INTERGENIC
SBS Chr6 21070012 T-A Hetero INTERGENIC
SBS Chr6 26488683 G-T Hetero NON_SYNONYMOUS_CODING OsKitaake06g237900
SBS Chr7 1236291 C-T Homo UTR_5_PRIME
SBS Chr7 12649300 C-T Homo INTERGENIC
SBS Chr7 28583782 C-T Homo INTERGENIC
SBS Chr8 9401287 C-T Homo INTERGENIC
SBS Chr8 12886359 G-C Homo INTERGENIC
SBS Chr8 16638306 G-A Homo INTERGENIC
SBS Chr8 19404422 C-T Homo INTERGENIC
SBS Chr9 3986787 G-A Hetero SYNONYMOUS_CODING
SBS Chr9 4134344 G-C Hetero INTERGENIC
SBS Chr9 5613852 G-C Hetero INTERGENIC
SBS Chr9 7061112 G-A Homo INTERGENIC
SBS Chr10 1770724 A-T Hetero UTR_5_PRIME
SBS Chr10 7015472 C-T Hetero INTERGENIC
SBS Chr10 14808624 T-C Homo INTERGENIC
SBS Chr10 14815705 A-G Homo INTERGENIC
SBS Chr10 23339960 T-A Hetero INTERGENIC
SBS Chr11 723288 C-T Homo INTERGENIC
SBS Chr11 15841012 C-A Homo INTRON

Deletions: 29

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr6 6754 7106 352
Deletion Chr12 19587 19593 6 OsKitaake12g000100
Deletion Chr5 3340758 3340759 1
Deletion Chr7 4167619 4167622 3
Deletion Chr3 4177922 4177923 1
Deletion Chr8 4519308 4519317 9
Deletion Chr4 6284417 6284422 5
Deletion Chr3 7356859 7356861 2
Deletion Chr7 8301454 8301456 2
Deletion Chr5 9484241 9484243 2 OsKitaake05g087202
Deletion Chr5 9607670 9607677 7 OsKitaake05g088400
Deletion Chr8 9852968 9852974 6
Deletion Chr8 9859747 9859748 1
Deletion Chr8 10847295 10847296 1
Deletion Chr12 18989720 18989722 2
Deletion Chr12 20269546 20269557 11
Deletion Chr4 21439251 21439257 6
Deletion Chr9 22001813 22001814 1
Deletion Chr4 22258825 22258828 3
Deletion Chr10 22554001 22569000 14999 2
Deletion Chr8 22593898 22593905 7
Deletion Chr3 23209753 23209754 1
Deletion Chr4 24978405 24978410 5 OsKitaake04g167100
Deletion Chr1 25340858 25340859 1 OsKitaake01g245300
Deletion Chr1 26011721 26011723 2
Deletion Chr6 26488439 26488445 6
Deletion Chr5 27883502 27883503 1
Deletion Chr4 31906072 31906081 9
Deletion Chr1 32433282 32433284 2

Insertions: 4

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr1 37466102 37466106 3
Insertion Chr3 14519147 14519150 2
Insertion Chr10 3468139 3468142 2
Insertion Chr10 8005993 8005997 3

Inversions: 2

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr7 20080874 20323921 OsKitaake07g164800
Inversion Chr7 20080881 20323923 OsKitaake07g164800

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	7372699	T-A	Hetero	INTERGENIC
SBS	Chr1	24750023	G-A	Hetero	INTERGENIC
SBS	Chr1	42187235	T-A	Hetero	INTERGENIC
SBS	Chr2	16972553	C-T	Hetero	INTERGENIC
SBS	Chr3	161370	G-C	Hetero	INTERGENIC
SBS	Chr3	8630194	C-T	Hetero	SYNONYMOUS_CODING
SBS	Chr3	8630195	C-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake03g118400
SBS	Chr3	9133204	G-A	Hetero	INTERGENIC
SBS	Chr3	19516989	C-T	Hetero	INTERGENIC
SBS	Chr3	31363117	T-C	Homo	INTERGENIC
SBS	Chr4	17737760	T-C	Homo	INTERGENIC
SBS	Chr4	20674585	A-T	Homo	INTERGENIC
SBS	Chr4	20674586	C-T	Homo	INTERGENIC
SBS	Chr4	26075638	C-T	Homo	INTERGENIC
SBS	Chr5	12152179	C-T	Homo	INTERGENIC
SBS	Chr5	21698706	C-T	Hetero	INTERGENIC
SBS	Chr5	24358997	T-A	Hetero	UTR_3_PRIME
SBS	Chr6	649655	C-G	Homo	INTERGENIC
SBS	Chr6	7100758	C-T	Homo	INTERGENIC
SBS	Chr6	16724781	T-A	Hetero	INTERGENIC
SBS	Chr6	21070012	T-A	Hetero	INTERGENIC
SBS	Chr6	26488683	G-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake06g237900
SBS	Chr7	1236291	C-T	Homo	UTR_5_PRIME
SBS	Chr7	12649300	C-T	Homo	INTERGENIC
SBS	Chr7	28583782	C-T	Homo	INTERGENIC
SBS	Chr8	9401287	C-T	Homo	INTERGENIC
SBS	Chr8	12886359	G-C	Homo	INTERGENIC
SBS	Chr8	16638306	G-A	Homo	INTERGENIC
SBS	Chr8	19404422	C-T	Homo	INTERGENIC
SBS	Chr9	3986787	G-A	Hetero	SYNONYMOUS_CODING
SBS	Chr9	4134344	G-C	Hetero	INTERGENIC
SBS	Chr9	5613852	G-C	Hetero	INTERGENIC
SBS	Chr9	7061112	G-A	Homo	INTERGENIC
SBS	Chr10	1770724	A-T	Hetero	UTR_5_PRIME
SBS	Chr10	7015472	C-T	Hetero	INTERGENIC
SBS	Chr10	14808624	T-C	Homo	INTERGENIC
SBS	Chr10	14815705	A-G	Homo	INTERGENIC
SBS	Chr10	23339960	T-A	Hetero	INTERGENIC
SBS	Chr11	723288	C-T	Homo	INTERGENIC
SBS	Chr11	15841012	C-A	Homo	INTRON

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr6	6754	7106	352
Deletion	Chr12	19587	19593	6	OsKitaake12g000100
Deletion	Chr5	3340758	3340759	1
Deletion	Chr7	4167619	4167622	3
Deletion	Chr3	4177922	4177923	1
Deletion	Chr8	4519308	4519317	9
Deletion	Chr4	6284417	6284422	5
Deletion	Chr3	7356859	7356861	2
Deletion	Chr7	8301454	8301456	2
Deletion	Chr5	9484241	9484243	2	OsKitaake05g087202
Deletion	Chr5	9607670	9607677	7	OsKitaake05g088400
Deletion	Chr8	9852968	9852974	6
Deletion	Chr8	9859747	9859748	1
Deletion	Chr8	10847295	10847296	1
Deletion	Chr12	18989720	18989722	2
Deletion	Chr12	20269546	20269557	11
Deletion	Chr4	21439251	21439257	6
Deletion	Chr9	22001813	22001814	1
Deletion	Chr4	22258825	22258828	3
Deletion	Chr10	22554001	22569000	14999	2
Deletion	Chr8	22593898	22593905	7
Deletion	Chr3	23209753	23209754	1
Deletion	Chr4	24978405	24978410	5	OsKitaake04g167100
Deletion	Chr1	25340858	25340859	1	OsKitaake01g245300
Deletion	Chr1	26011721	26011723	2
Deletion	Chr6	26488439	26488445	6
Deletion	Chr5	27883502	27883503	1
Deletion	Chr4	31906072	31906081	9
Deletion	Chr1	32433282	32433284	2

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr7	20080874	20323921	OsKitaake07g164800
Inversion	Chr7	20080881	20323923	OsKitaake07g164800

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes