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Mutant Information

Mutant Name	FN-72 [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN-72 Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 19

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 3482723 G-A Hetero INTERGENIC
SBS Chr1 5417778 G-A Hetero INTERGENIC
SBS Chr1 19982165 G-C Hetero INTERGENIC
SBS Chr1 21847555 G-A Hetero INTERGENIC
SBS Chr2 6213187 G-T Hetero UTR_3_PRIME
SBS Chr2 26294829 T-G Homo INTERGENIC
SBS Chr4 9622663 G-C Hetero INTERGENIC
SBS Chr4 11289496 T-A Homo INTERGENIC
SBS Chr4 21587652 T-C Homo INTERGENIC
SBS Chr4 30079697 G-A Homo INTERGENIC
SBS Chr6 6714729 T-G Homo INTERGENIC
SBS Chr6 22522041 C-T Hetero INTERGENIC
SBS Chr6 30235835 G-A Homo INTERGENIC
SBS Chr7 5873941 C-T Hetero INTERGENIC
SBS Chr7 18891434 C-T Homo INTERGENIC
SBS Chr7 20669797 G-A Homo INTRON
SBS Chr8 9300287 A-T Hetero INTERGENIC
SBS Chr8 13995283 G-A Homo INTERGENIC
SBS Chr11 11625303 C-T Hetero INTERGENIC

Deletions: 19

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr2 2229736 2229739 3
Deletion Chr11 2752625 2752839 214
Deletion Chr1 2853275 2853277 2
Deletion Chr3 5113964 5113974 10
Deletion Chr12 5246306 5246310 4
Deletion Chr4 5676823 5676826 3
Deletion Chr10 8034231 8034243 12
Deletion Chr2 9210098 9210106 8
Deletion Chr7 9653144 9653149 5
Deletion Chr2 10349925 10349930 5
Deletion Chr11 10787711 10787821 110
Deletion Chr5 13318626 13318629 3
Deletion Chr3 18274177 18274183 6
Deletion Chr12 18339464 18339531 67
Deletion Chr1 20061745 20061749 4
Deletion Chr7 21735304 21735311 7
Deletion Chr4 26231162 26231185 23
Deletion Chr7 27378480 27378484 4
Deletion Chr4 31035480 31035491 11

Insertions: 3

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr3 37320567 37320569 1
Insertion Chr5 15202633 15202636 2
Insertion Chr5 28827037 28827040 2

Translocations: 2

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr12 1133554 Chr2 16057042 2
Translocation Chr12 1136872 Chr2 16057106 2

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	3482723	G-A	Hetero	INTERGENIC
SBS	Chr1	5417778	G-A	Hetero	INTERGENIC
SBS	Chr1	19982165	G-C	Hetero	INTERGENIC
SBS	Chr1	21847555	G-A	Hetero	INTERGENIC
SBS	Chr2	6213187	G-T	Hetero	UTR_3_PRIME
SBS	Chr2	26294829	T-G	Homo	INTERGENIC
SBS	Chr4	9622663	G-C	Hetero	INTERGENIC
SBS	Chr4	11289496	T-A	Homo	INTERGENIC
SBS	Chr4	21587652	T-C	Homo	INTERGENIC
SBS	Chr4	30079697	G-A	Homo	INTERGENIC
SBS	Chr6	6714729	T-G	Homo	INTERGENIC
SBS	Chr6	22522041	C-T	Hetero	INTERGENIC
SBS	Chr6	30235835	G-A	Homo	INTERGENIC
SBS	Chr7	5873941	C-T	Hetero	INTERGENIC
SBS	Chr7	18891434	C-T	Homo	INTERGENIC
SBS	Chr7	20669797	G-A	Homo	INTRON
SBS	Chr8	9300287	A-T	Hetero	INTERGENIC
SBS	Chr8	13995283	G-A	Homo	INTERGENIC
SBS	Chr11	11625303	C-T	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr2	2229736	2229739	3
Deletion	Chr11	2752625	2752839	214
Deletion	Chr1	2853275	2853277	2
Deletion	Chr3	5113964	5113974	10
Deletion	Chr12	5246306	5246310	4
Deletion	Chr4	5676823	5676826	3
Deletion	Chr10	8034231	8034243	12
Deletion	Chr2	9210098	9210106	8
Deletion	Chr7	9653144	9653149	5
Deletion	Chr2	10349925	10349930	5
Deletion	Chr11	10787711	10787821	110
Deletion	Chr5	13318626	13318629	3
Deletion	Chr3	18274177	18274183	6
Deletion	Chr12	18339464	18339531	67
Deletion	Chr1	20061745	20061749	4
Deletion	Chr7	21735304	21735311	7
Deletion	Chr4	26231162	26231185	23
Deletion	Chr7	27378480	27378484	4
Deletion	Chr4	31035480	31035491	11

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr12	1133554	Chr2	16057042	2
Translocation	Chr12	1136872	Chr2	16057106	2

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes