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| Mutant Information |
|---|
| Mutant Name | FN-73 [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN-73 Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 32
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 6153581 | G-A | Hetero | INTERGENIC | |
| SBS | Chr1 | 21557203 | A-C | Homo | INTERGENIC | |
| SBS | Chr1 | 41367737 | T-A | Homo | INTERGENIC | |
| SBS | Chr2 | 1811645 | A-G | Hetero | INTERGENIC | |
| SBS | Chr3 | 532417 | A-G | Hetero | INTERGENIC | |
| SBS | Chr3 | 37368569 | A-G | Hetero | INTERGENIC | |
| SBS | Chr4 | 1328401 | T-A | Hetero | UTR_3_PRIME | |
| SBS | Chr4 | 5651184 | C-A | Hetero | INTERGENIC | |
| SBS | Chr4 | 19138332 | C-G | Homo | INTERGENIC | |
| SBS | Chr6 | 2648020 | G-T | Homo | INTERGENIC | |
| SBS | Chr6 | 13140067 | G-A | Homo | INTERGENIC | |
| SBS | Chr6 | 15917898 | C-T | Hetero | INTERGENIC | |
| SBS | Chr7 | 6535138 | A-C | Hetero | INTERGENIC | |
| SBS | Chr7 | 13257904 | G-A | Hetero | INTRON | |
| SBS | Chr7 | 14878088 | A-G | Hetero | INTERGENIC | |
| SBS | Chr7 | 16621828 | G-A | Hetero | INTERGENIC | |
| SBS | Chr7 | 25086697 | C-T | Homo | NON_SYNONYMOUS_CODING | OsKitaake07g225700 |
| SBS | Chr8 | 12638944 | T-G | Hetero | INTERGENIC | |
| SBS | Chr8 | 16420134 | C-T | Hetero | INTERGENIC | |
| SBS | Chr8 | 17563569 | A-T | Hetero | NON_SYNONYMOUS_CODING | OsKitaake08g131800 |
| SBS | Chr9 | 7126473 | G-T | Homo | INTERGENIC | |
| SBS | Chr9 | 8884331 | G-A | Hetero | INTERGENIC | |
| SBS | Chr9 | 19290500 | G-A | Hetero | INTERGENIC | |
| SBS | Chr10 | 4700465 | A-G | Homo | INTERGENIC | |
| SBS | Chr10 | 11061527 | T-G | Hetero | INTERGENIC | |
| SBS | Chr10 | 22872119 | G-A | Hetero | INTERGENIC | |
| SBS | Chr11 | 62279 | G-A | Hetero | INTERGENIC | |
| SBS | Chr11 | 8763372 | C-A | Hetero | INTERGENIC | |
| SBS | Chr11 | 9551229 | A-G | Hetero | INTERGENIC | |
| SBS | Chr11 | 10699034 | G-A | Homo | INTERGENIC | |
| SBS | Chr11 | 20578540 | G-A | Hetero | INTERGENIC | |
| SBS | Chr12 | 14344055 | C-T | Hetero | INTERGENIC |
Deletions: 14
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr8 | 6949879 | 6949880 | 1 | |
| Deletion | Chr8 | 14673796 | 14673797 | 1 | OsKitaake08g115200 |
| Deletion | Chr6 | 15742351 | 15742352 | 1 | |
| Deletion | Chr7 | 17501331 | 17501408 | 77 | |
| Deletion | Chr3 | 17637613 | 17637616 | 3 | |
| Deletion | Chr6 | 18684957 | 18684961 | 4 | |
| Deletion | Chr11 | 23030374 | 23030381 | 7 | |
| Deletion | Chr7 | 25088292 | 25088295 | 3 | |
| Deletion | Chr1 | 28255766 | 28255767 | 1 | |
| Deletion | Chr2 | 29278270 | 29278278 | 8 | |
| Deletion | Chr1 | 29509325 | 29509330 | 5 | OsKitaake01g289100 |
| Deletion | Chr2 | 32648998 | 32648999 | 1 | OsKitaake02g334100 |
| Deletion | Chr4 | 34203223 | 34203226 | 3 | |
| Deletion | Chr1 | 41368116 | 41368123 | 7 |
Insertions: 3
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Insertion | Chr4 | 17314186 | 17314189 | 2 | |
| Insertion | Chr4 | 17689269 | 17689272 | 2 | |
| Insertion | Chr10 | 7751577 | 7751580 | 2 |
Translocations: 4
Variant Type |
Chromosome |
Position 1 |
Chromosome |
Position 2 |
Number of Genes |
| Translocation | Chr7 | 6459299 | Chr2 | 31992671 | |
| Translocation | Chr7 | 6460604 | Chr2 | 31993995 | |
| Translocation | Chr7 | 26369257 | Chr2 | 31992681 | |
| Translocation | Chr7 | 26369260 | Chr2 | 31993995 |