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| Mutant Information |
|---|
| Mutant Name | FN-74 [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN-74 Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 29
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 10227576 | G-A | Hetero | INTERGENIC | |
| SBS | Chr1 | 15756013 | G-A | Hetero | INTERGENIC | |
| SBS | Chr1 | 42942644 | A-T | Homo | NON_SYNONYMOUS_CODING | OsKitaake01g473300 |
| SBS | Chr2 | 4492444 | C-T | Hetero | INTERGENIC | |
| SBS | Chr2 | 24534193 | T-A | Hetero | INTERGENIC | |
| SBS | Chr3 | 2701287 | C-T | Hetero | INTERGENIC | |
| SBS | Chr3 | 6014141 | C-T | Homo | INTRON | |
| SBS | Chr3 | 8213467 | G-A | Homo | INTERGENIC | |
| SBS | Chr3 | 8827893 | A-G | Homo | INTRON | |
| SBS | Chr3 | 17280713 | A-T | Hetero | INTERGENIC | |
| SBS | Chr3 | 19852213 | T-G | Hetero | INTERGENIC | |
| SBS | Chr4 | 7375894 | A-T | Hetero | INTRON | |
| SBS | Chr5 | 11263928 | G-A | Hetero | INTERGENIC | |
| SBS | Chr5 | 12017853 | A-G | Hetero | INTERGENIC | |
| SBS | Chr5 | 15368263 | G-T | Homo | INTERGENIC | |
| SBS | Chr6 | 11348746 | T-G | Hetero | INTERGENIC | |
| SBS | Chr7 | 3251067 | C-A | Hetero | INTERGENIC | |
| SBS | Chr7 | 14502225 | C-A | Hetero | INTERGENIC | |
| SBS | Chr7 | 25836602 | T-A | Hetero | INTERGENIC | |
| SBS | Chr8 | 1494451 | G-C | Homo | NON_SYNONYMOUS_CODING | OsKitaake08g018500 |
| SBS | Chr8 | 4318965 | T-A | Homo | INTERGENIC | |
| SBS | Chr8 | 7476062 | G-T | Hetero | INTERGENIC | |
| SBS | Chr9 | 8501715 | T-C | Homo | INTERGENIC | |
| SBS | Chr10 | 2455473 | C-T | Homo | NON_SYNONYMOUS_CODING | OsKitaake10g019600 |
| SBS | Chr10 | 15598045 | G-A | Hetero | INTERGENIC | |
| SBS | Chr11 | 17349955 | G-T | Hetero | NON_SYNONYMOUS_CODING | OsKitaake11g135600 |
| SBS | Chr11 | 25177604 | C-T | Homo | INTERGENIC | |
| SBS | Chr12 | 3775443 | A-C | Hetero | INTERGENIC | |
| SBS | Chr12 | 8715794 | G-T | Homo | INTERGENIC |
Deletions: 10
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr9 | 503944 | 503945 | 1 | |
| Deletion | Chr11 | 1616754 | 1616759 | 5 | OsKitaake11g021200 |
| Deletion | Chr11 | 6641476 | 6641798 | 322 | OsKitaake11g078900 |
| Deletion | Chr7 | 8467001 | 9050000 | 582999 | 36 |
| Deletion | Chr1 | 11068486 | 11068487 | 1 | |
| Deletion | Chr2 | 13837961 | 13837963 | 2 | |
| Deletion | Chr4 | 16945079 | 16945083 | 4 | |
| Deletion | Chr6 | 19139287 | 19139289 | 2 | |
| Deletion | Chr3 | 32053001 | 32140000 | 86999 | 18 |
| Deletion | Chr1 | 39650000 | 39650002 | 2 | OsKitaake01g428000 |
Insertions: 4
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Insertion | Chr3 | 22175582 | 22175605 | 22 | OsKitaake03g241635  |
| Insertion | Chr4 | 2728023 | 2728026 | 2 | |
| Insertion | Chr4 | 9487228 | 9487230 | 1 | |
| Insertion | Chr12 | 16545651 | 16545655 | 3 |
Inversions: 2
Variant Type |
Chromosome |
Position 1 |
Position 2 |
Number of Genes |
| Inversion | Chr8 | 1783044 | 2385004 | OsKitaake08g028500 |
| Inversion | Chr8 | 1783052 | 2385006 | OsKitaake08g028500 |
Translocations: 3
Variant Type |
Chromosome |
Position 1 |
Chromosome |
Position 2 |
Number of Genes |
| Translocation | Chr7 | 12738835 | Chr3 | 32056072 | OsKitaake03g339300 |
| Translocation | Chr6 | 29259835 | Chr4 | 7831190 | OsKitaake06g271000 |
| Translocation | Chr6 | 29259837 | Chr4 | 7822652 | OsKitaake06g271000 |