Search Kitaake

Mutant Information

Mutant Name	FN-75 [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN-75 Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 26

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr2 28285316 G-A Homo INTERGENIC
SBS Chr4 8146349 C-T Homo INTERGENIC
SBS Chr4 23832420 C-T Homo INTERGENIC
SBS Chr4 34901981 G-A Homo INTRON
SBS Chr5 1847949 G-C Hetero INTERGENIC
SBS Chr5 5472947 C-T Hetero NON_SYNONYMOUS_CODING OsKitaake05g059300
SBS Chr5 7331077 G-C Hetero INTERGENIC
SBS Chr5 10101197 T-A Hetero INTERGENIC
SBS Chr5 16856001 C-T Homo INTERGENIC
SBS Chr5 29873890 A-T Hetero INTERGENIC
SBS Chr5 30170015 T-A Hetero INTERGENIC
SBS Chr6 15144547 G-A Hetero INTERGENIC
SBS Chr6 18330390 T-C Hetero UTR_3_PRIME
SBS Chr6 21166193 G-T Homo INTERGENIC
SBS Chr6 21305943 A-G Hetero INTRON
SBS Chr7 21781512 A-C Hetero INTERGENIC
SBS Chr7 27634094 A-G Homo INTERGENIC
SBS Chr7 27951305 A-C Homo INTERGENIC
SBS Chr8 6679146 T-C Hetero INTERGENIC
SBS Chr8 19061326 G-A Homo INTERGENIC
SBS Chr8 23907418 C-T Homo INTERGENIC
SBS Chr8 29073072 G-T Homo UTR_5_PRIME
SBS Chr9 1734213 T-C Hetero INTERGENIC
SBS Chr9 8831440 A-G Hetero INTERGENIC
SBS Chr9 11267255 G-C Homo NON_SYNONYMOUS_CODING OsKitaake09g070100
SBS Chr12 14843441 C-T Hetero INTERGENIC

Deletions: 12

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr4 598925 599069 144
Deletion Chr7 4742164 4742289 125
Deletion Chr7 6312837 6312839 2
Deletion Chr8 10806835 10806909 74
Deletion Chr2 13094657 13094730 73
Deletion Chr8 13976631 13976632 1 OsKitaake08g111000
Deletion Chr10 15963781 15963783 2
Deletion Chr5 17756160 17756168 8
Deletion Chr3 23648254 23648255 1
Deletion Chr7 26080246 26080247 1
Deletion Chr1 31118835 31118838 3
Deletion Chr1 42608052 42608294 242

Insertions: 6

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr3 18785707 18785710 2
Insertion Chr6 3314139 3314142 2
Insertion Chr6 27824223 27824227 3
Insertion Chr8 29145562 29145565 2
Insertion Chr5 23425561 23425563 1
Insertion Chr10 1149788 1149790 1

Inversions: 2

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr6 16221848 16629386
Inversion Chr6 16230219 16629396 OsKitaake06g155800

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr2	28285316	G-A	Homo	INTERGENIC
SBS	Chr4	8146349	C-T	Homo	INTERGENIC
SBS	Chr4	23832420	C-T	Homo	INTERGENIC
SBS	Chr4	34901981	G-A	Homo	INTRON
SBS	Chr5	1847949	G-C	Hetero	INTERGENIC
SBS	Chr5	5472947	C-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake05g059300
SBS	Chr5	7331077	G-C	Hetero	INTERGENIC
SBS	Chr5	10101197	T-A	Hetero	INTERGENIC
SBS	Chr5	16856001	C-T	Homo	INTERGENIC
SBS	Chr5	29873890	A-T	Hetero	INTERGENIC
SBS	Chr5	30170015	T-A	Hetero	INTERGENIC
SBS	Chr6	15144547	G-A	Hetero	INTERGENIC
SBS	Chr6	18330390	T-C	Hetero	UTR_3_PRIME
SBS	Chr6	21166193	G-T	Homo	INTERGENIC
SBS	Chr6	21305943	A-G	Hetero	INTRON
SBS	Chr7	21781512	A-C	Hetero	INTERGENIC
SBS	Chr7	27634094	A-G	Homo	INTERGENIC
SBS	Chr7	27951305	A-C	Homo	INTERGENIC
SBS	Chr8	6679146	T-C	Hetero	INTERGENIC
SBS	Chr8	19061326	G-A	Homo	INTERGENIC
SBS	Chr8	23907418	C-T	Homo	INTERGENIC
SBS	Chr8	29073072	G-T	Homo	UTR_5_PRIME
SBS	Chr9	1734213	T-C	Hetero	INTERGENIC
SBS	Chr9	8831440	A-G	Hetero	INTERGENIC
SBS	Chr9	11267255	G-C	Homo	NON_SYNONYMOUS_CODING	OsKitaake09g070100
SBS	Chr12	14843441	C-T	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr4	598925	599069	144
Deletion	Chr7	4742164	4742289	125
Deletion	Chr7	6312837	6312839	2
Deletion	Chr8	10806835	10806909	74
Deletion	Chr2	13094657	13094730	73
Deletion	Chr8	13976631	13976632	1	OsKitaake08g111000
Deletion	Chr10	15963781	15963783	2
Deletion	Chr5	17756160	17756168	8
Deletion	Chr3	23648254	23648255	1
Deletion	Chr7	26080246	26080247	1
Deletion	Chr1	31118835	31118838	3
Deletion	Chr1	42608052	42608294	242

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr6	16221848	16629386
Inversion	Chr6	16230219	16629396	OsKitaake06g155800

Main menu

You are here

Search Kitaake

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes