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| Mutant Information |
|---|
| Mutant Name | FN-76 [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN-76 Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 38
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 18198338 | G-T | Homo | INTERGENIC | |
| SBS | Chr1 | 20675625 | C-T | Homo | UTR_3_PRIME | |
| SBS | Chr1 | 21925380 | C-T | Hetero | INTRON | |
| SBS | Chr2 | 8140446 | A-T | Homo | NON_SYNONYMOUS_CODING | OsKitaake02g104300 |
| SBS | Chr2 | 8140447 | C-T | Homo | SYNONYMOUS_CODING | |
| SBS | Chr2 | 28881336 | T-C | Hetero | INTERGENIC | |
| SBS | Chr2 | 33298946 | G-A | Hetero | INTERGENIC | |
| SBS | Chr2 | 33994056 | C-T | Homo | INTERGENIC | |
| SBS | Chr2 | 36406925 | A-G | Hetero | INTRON | |
| SBS | Chr3 | 13697883 | A-C | Homo | INTERGENIC | |
| SBS | Chr3 | 23043512 | G-A | Homo | INTRON | |
| SBS | Chr4 | 8816920 | C-T | Homo | INTERGENIC | |
| SBS | Chr4 | 12414127 | G-A | Homo | INTERGENIC | |
| SBS | Chr4 | 16937798 | A-T | Homo | INTERGENIC | |
| SBS | Chr4 | 20796882 | G-C | Homo | INTERGENIC | |
| SBS | Chr4 | 35990069 | A-G | Homo | SYNONYMOUS_CODING | |
| SBS | Chr5 | 15824226 | A-G | Hetero | INTERGENIC | |
| SBS | Chr5 | 17723746 | C-T | Hetero | INTERGENIC | |
| SBS | Chr6 | 6342425 | C-G | Homo | INTERGENIC | |
| SBS | Chr6 | 16565062 | A-T | Hetero | INTERGENIC | |
| SBS | Chr7 | 298606 | T-C | Hetero | INTERGENIC | |
| SBS | Chr7 | 18432763 | G-A | Hetero | INTERGENIC | |
| SBS | Chr8 | 4258873 | C-T | Hetero | INTERGENIC | |
| SBS | Chr8 | 11747407 | A-C | Hetero | INTERGENIC | |
| SBS | Chr8 | 18593703 | G-A | Hetero | INTERGENIC | |
| SBS | Chr9 | 5399641 | G-T | Homo | INTRON | |
| SBS | Chr10 | 1109173 | G-A | Homo | INTERGENIC | |
| SBS | Chr10 | 2697768 | A-G | Homo | INTERGENIC | |
| SBS | Chr10 | 4404329 | T-C | Hetero | INTERGENIC | |
| SBS | Chr11 | 2408185 | C-T | Homo | NON_SYNONYMOUS_CODING | OsKitaake11g034833 |
| SBS | Chr11 | 2425161 | A-C | Homo | INTERGENIC | |
| SBS | Chr11 | 9100820 | C-T | Homo | INTERGENIC | |
| SBS | Chr11 | 11294874 | G-A | Hetero | INTERGENIC | |
| SBS | Chr11 | 24337151 | C-A | Homo | INTERGENIC | |
| SBS | Chr11 | 27959287 | C-T | Hetero | INTRON | |
| SBS | Chr12 | 4971591 | G-C | Hetero | INTRON | |
| SBS | Chr12 | 9860332 | G-T | Homo | INTERGENIC | |
| SBS | Chr12 | 21677045 | G-T | Homo | INTERGENIC |
Deletions: 23
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr7 | 1541078 | 1541079 | 1 | OsKitaake07g021200 |
| Deletion | Chr10 | 2384049 | 2384052 | 3 | |
| Deletion | Chr9 | 5010001 | 5396000 | 385999 | 17 |
| Deletion | Chr7 | 11271922 | 11271928 | 6 | |
| Deletion | Chr11 | 11418973 | 11418974 | 1 | |
| Deletion | Chr4 | 11522869 | 11522879 | 10 | |
| Deletion | Chr4 | 11725280 | 11725283 | 3 | |
| Deletion | Chr2 | 11964885 | 11964896 | 11 | |
| Deletion | Chr1 | 13078478 | 13078480 | 2 | |
| Deletion | Chr9 | 15534028 | 15534033 | 5 | |
| Deletion | Chr8 | 15855001 | 15990000 | 134999 | 14 |
| Deletion | Chr9 | 17104321 | 17104324 | 3 | |
| Deletion | Chr5 | 20071655 | 20071659 | 4 | |
| Deletion | Chr3 | 21315993 | 21315994 | 1 | |
| Deletion | Chr11 | 23754638 | 23754639 | 1 | |
| Deletion | Chr2 | 24623843 | 24623845 | 2 | |
| Deletion | Chr6 | 24831661 | 24831671 | 10 | |
| Deletion | Chr3 | 24851685 | 24851686 | 1 | |
| Deletion | Chr3 | 26944459 | 26944460 | 1 | |
| Deletion | Chr6 | 27507255 | 27507258 | 3 | |
| Deletion | Chr3 | 29965754 | 29965756 | 2 | |
| Deletion | Chr4 | 30147421 | 30147425 | 4 | OsKitaake04g231600 |
| Deletion | Chr4 | 36463062 | 36463065 | 3 |
Insertions: 3
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Insertion | Chr1 | 29663137 | 29663139 | 1 | |
| Insertion | Chr1 | 30253324 | 30253326 | 1 | OsKitaake01g298000  |
| Insertion | Chr6 | 10871159 | 10871162 | 2 | OsKitaake06g121250 |
Inversions: 7
Variant Type |
Chromosome |
Position 1 |
Position 2 |
Number of Genes |
| Inversion | Chr9 | 5500373 | 5689986 | OsKitaake09g032300 |
| Inversion | Chr9 | 5500387 | 5689984 | OsKitaake09g032300 |
| Inversion | Chr9 | 7518830 | 7606008 | |
| Inversion | Chr9 | 7518835 | 7606128 | |
| Inversion | Chr10 | 13584666 | 14167953 | |
| Inversion | Chr8 | 15131375 | 15854406 | |
| Inversion | Chr8 | 15131383 | 15987878 |
Translocations: 4
Variant Type |
Chromosome |
Position 1 |
Chromosome |
Position 2 |
Number of Genes |
| Translocation | Chr10 | 13584631 | Chr7 | 18471066 | OsKitaake07g149800 |
| Translocation | Chr10 | 14167947 | Chr7 | 18429351 | |
| Translocation | Chr8 | 15854412 | Chr6 | 24433386 | OsKitaake06g216000 |
| Translocation | Chr8 | 15855888 | Chr6 | 24433383 | OsKitaake06g216000 |