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| Mutant Information |
|---|
| Mutant Name | FN-77 [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN-77 Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 18
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 23375150 | G-T | Hetero | INTERGENIC | |
| SBS | Chr3 | 27037274 | T-C | Hetero | INTERGENIC | |
| SBS | Chr3 | 33961419 | A-T | Hetero | INTRON | |
| SBS | Chr4 | 17355353 | C-T | Homo | INTERGENIC | |
| SBS | Chr4 | 19938844 | G-A | Homo | INTERGENIC | |
| SBS | Chr5 | 15841544 | C-T | Homo | INTERGENIC | |
| SBS | Chr5 | 21268609 | A-G | Hetero | INTRON | |
| SBS | Chr7 | 21261820 | T-A | Homo | INTERGENIC | |
| SBS | Chr9 | 704287 | A-G | Hetero | INTERGENIC | |
| SBS | Chr9 | 10422105 | T-G | Hetero | INTRON | |
| SBS | Chr9 | 13203698 | G-A | Hetero | INTERGENIC | |
| SBS | Chr9 | 14083157 | T-C | Homo | INTERGENIC | |
| SBS | Chr9 | 22046555 | C-A | Hetero | INTRON | |
| SBS | Chr10 | 14873505 | G-C | Hetero | INTERGENIC | |
| SBS | Chr10 | 23171154 | A-G | Hetero | INTERGENIC | |
| SBS | Chr11 | 10913965 | A-C | Hetero | INTERGENIC | |
| SBS | Chr12 | 9846992 | C-T | Homo | INTERGENIC | |
| SBS | Chr12 | 21280718 | T-G | Hetero | INTERGENIC |
Deletions: 10
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr2 | 8504988 | 8504989 | 1 | OsKitaake02g108050 |
| Deletion | Chr2 | 9737001 | 9773000 | 35999 | 4 |
| Deletion | Chr12 | 17598870 | 17598872 | 2 | |
| Deletion | Chr2 | 19578024 | 19578030 | 6 | |
| Deletion | Chr12 | 20753001 | 20777000 | 23999 | 3 |
| Deletion | Chr3 | 20779001 | 20815000 | 35999 | 3 |
| Deletion | Chr8 | 21217417 | 21217418 | 1 | |
| Deletion | Chr6 | 22917335 | 22917336 | 1 | |
| Deletion | Chr11 | 25175620 | 25175622 | 2 | |
| Deletion | Chr8 | 27002001 | 27352000 | 349999 | 61 |
Insertions: 4
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Insertion | Chr3 | 16040105 | 16040107 | 1 | |
| Insertion | Chr4 | 9496147 | 9496149 | 1 | |
| Insertion | Chr4 | 9891532 | 9891534 | 1 | |
| Insertion | Chr5 | 9695636 | 9695638 | 1 | OsKitaake05g088800  |
Inversions: 2
Variant Type |
Chromosome |
Position 1 |
Position 2 |
Number of Genes |
| Inversion | Chr4 | 8965620 | 9083752 | OsKitaake04g046300 |
| Inversion | Chr4 | 8965627 | 9083752 | OsKitaake04g046300 |