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| Mutant Information |
|---|
| Mutant Name | FN-78 [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN-78 Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 34
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 1386180 | G-A | Hetero | INTERGENIC | |
| SBS | Chr1 | 11258109 | C-A | Hetero | INTRON | |
| SBS | Chr1 | 41174370 | T-C | Homo | SPLICE_SITE_REGION | |
| SBS | Chr2 | 9793541 | A-C | Hetero | INTERGENIC | |
| SBS | Chr2 | 18541405 | G-A | Homo | INTERGENIC | |
| SBS | Chr2 | 27825502 | G-A | Homo | INTERGENIC | |
| SBS | Chr3 | 15990420 | A-G | Homo | INTERGENIC | |
| SBS | Chr3 | 32555336 | T-C | Hetero | INTERGENIC | |
| SBS | Chr4 | 2475206 | A-T | Hetero | INTERGENIC | |
| SBS | Chr4 | 4214248 | C-G | Hetero | INTERGENIC | |
| SBS | Chr4 | 5137497 | T-A | Hetero | INTRON | |
| SBS | Chr4 | 19393202 | C-T | Homo | INTERGENIC | |
| SBS | Chr4 | 30606802 | A-T | Hetero | INTRON | |
| SBS | Chr6 | 2606689 | T-A | Homo | INTRON | |
| SBS | Chr6 | 2606690 | T-A | Homo | INTRON | |
| SBS | Chr6 | 18071732 | C-T | Hetero | INTERGENIC | |
| SBS | Chr6 | 24524520 | G-A | Hetero | INTERGENIC | |
| SBS | Chr6 | 25173389 | G-A | Hetero | INTERGENIC | |
| SBS | Chr6 | 25868761 | A-G | Hetero | UTR_5_PRIME | |
| SBS | Chr6 | 30027759 | A-T | Hetero | NON_SYNONYMOUS_CODING | OsKitaake06g281100 |
| SBS | Chr7 | 369664 | A-T | Hetero | UTR_3_PRIME | |
| SBS | Chr7 | 7765173 | G-A | Homo | INTERGENIC | |
| SBS | Chr8 | 2315484 | T-A | Homo | UTR_5_PRIME | |
| SBS | Chr10 | 3264317 | G-T | Homo | INTERGENIC | |
| SBS | Chr10 | 9096510 | C-T | Homo | INTERGENIC | |
| SBS | Chr10 | 13165178 | A-G | Homo | INTERGENIC | |
| SBS | Chr10 | 13488945 | T-C | Homo | UTR_5_PRIME | |
| SBS | Chr10 | 16080277 | G-A | Hetero | INTERGENIC | |
| SBS | Chr10 | 19122161 | G-A | Homo | INTERGENIC | |
| SBS | Chr11 | 10193584 | C-T | Hetero | INTERGENIC | |
| SBS | Chr11 | 17693082 | A-T | Hetero | INTERGENIC | |
| SBS | Chr11 | 17693083 | A-T | Hetero | INTERGENIC | |
| SBS | Chr12 | 19430651 | G-A | Hetero | INTERGENIC | |
| SBS | Chr12 | 24489278 | G-T | Homo | INTRON |
Deletions: 15
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr12 | 2542001 | 2579000 | 36999 | 4 |
| Deletion | Chr8 | 3025361 | 3025370 | 9 | |
| Deletion | Chr7 | 6954547 | 6954559 | 12 | |
| Deletion | Chr4 | 9346235 | 9346237 | 2 | |
| Deletion | Chr4 | 9393085 | 9393087 | 2 | |
| Deletion | Chr7 | 13427594 | 13427607 | 13 | |
| Deletion | Chr7 | 17803610 | 17803684 | 74 | |
| Deletion | Chr5 | 25347308 | 25347309 | 1 | |
| Deletion | Chr11 | 27412234 | 27412236 | 2 | |
| Deletion | Chr7 | 27665574 | 27665575 | 1 | |
| Deletion | Chr11 | 27700738 | 27700752 | 14 | OsKitaake11g226200 |
| Deletion | Chr1 | 31121594 | 31121605 | 11 | |
| Deletion | Chr1 | 33448540 | 33448545 | 5 | |
| Deletion | Chr1 | 33925215 | 33925216 | 1 | OsKitaake01g348800 |
| Deletion | Chr2 | 34507339 | 34507344 | 5 |
Insertions: 1
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Insertion | Chr8 | 29297879 | 29297882 | 2 |
Inversions: 2
Variant Type |
Chromosome |
Position 1 |
Position 2 |
Number of Genes |
| Inversion | Chr7 | 19464461 | 19513644 | OsKitaake07g158000 |
| Inversion | Chr7 | 19464470 | 19513642 | OsKitaake07g158000 |
Translocations: 2
Variant Type |
Chromosome |
Position 1 |
Chromosome |
Position 2 |
Number of Genes |
| Translocation | Chr12 | 11968107 | Chr10 | 16149826 | 2 |
| Translocation | Chr12 | 11968579 | Chr10 | 16149813 | 2 |