Search Kitaake

Mutant Information

Mutant Name	FN-8 [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN-8 Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 41

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 10323499 T-C Hetero INTERGENIC
SBS Chr1 15732887 T-C Hetero INTERGENIC
SBS Chr1 23209014 C-T Hetero INTERGENIC
SBS Chr1 27945045 T-A Homo INTERGENIC
SBS Chr1 32566734 G-A Hetero INTERGENIC
SBS Chr2 4536709 G-A Hetero INTRON
SBS Chr2 8159767 C-T Hetero INTERGENIC
SBS Chr2 18254211 G-A Hetero INTERGENIC
SBS Chr3 19733341 C-T Homo INTERGENIC
SBS Chr3 21032035 T-G Homo INTERGENIC
SBS Chr3 31305442 C-T Homo INTRON
SBS Chr3 31380020 C-T Hetero INTERGENIC
SBS Chr3 35094920 T-C Hetero INTRON
SBS Chr4 16850987 A-C Hetero INTERGENIC
SBS Chr5 9226614 C-T Hetero INTERGENIC
SBS Chr5 12209549 C-T Homo INTERGENIC
SBS Chr5 12814724 G-A Homo INTERGENIC
SBS Chr5 16700996 A-C Homo INTERGENIC
SBS Chr5 17574581 G-A Hetero INTERGENIC
SBS Chr5 21841062 C-T Homo UTR_3_PRIME
SBS Chr5 22856272 C-T Homo INTERGENIC
SBS Chr5 23314256 G-A Homo NON_SYNONYMOUS_CODING OsKitaake05g194800
SBS Chr5 25627276 G-C Hetero INTERGENIC
SBS Chr6 265728 A-T Hetero SPLICE_SITE_REGION
SBS Chr7 8476191 A-G Homo SYNONYMOUS_CODING
SBS Chr7 11960113 G-A Hetero INTERGENIC
SBS Chr7 25664165 G-A Homo INTRON
SBS Chr7 27192154 G-T Homo STOP_GAINED OsKitaake07g254401
SBS Chr8 21879607 C-T Homo STOP_GAINED OsKitaake08g165400
SBS Chr8 25667308 A-T Homo INTERGENIC
SBS Chr9 3907507 C-T Homo INTERGENIC
SBS Chr9 7549880 G-A Hetero INTERGENIC
SBS Chr10 1403305 C-A Hetero INTERGENIC
SBS Chr10 5650840 C-A Hetero INTRON
SBS Chr10 12517185 C-T Hetero INTERGENIC
SBS Chr10 12834880 A-G Hetero INTERGENIC
SBS Chr11 6927196 G-A Hetero INTERGENIC
SBS Chr11 16638573 A-G Hetero INTERGENIC
SBS Chr11 19079634 G-A Homo INTERGENIC
SBS Chr12 6011251 C-G Homo INTERGENIC
SBS Chr12 7769175 A-T Homo INTERGENIC

Deletions: 14

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr8 189546 189551 5
Deletion Chr12 6023557 6023562 5
Deletion Chr4 7040885 7040886 1
Deletion Chr9 7174001 7220000 45999 OsKitaake09g041800
Deletion Chr8 7757710 7757715 5
Deletion Chr12 8664545 8664546 1
Deletion Chr1 10116955 10116956 1
Deletion Chr1 14304251 14304259 8
Deletion Chr9 16407441 16407445 4
Deletion Chr2 17241031 17241041 10
Deletion Chr5 25029523 25029720 197
Deletion Chr12 25313899 25313902 3
Deletion Chr3 26952127 26952293 166
Deletion Chr5 29261269 29261271 2 OsKitaake05g277600

Inversions: 5

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr1 13753135 14354482
Inversion Chr1 13753148 14354493
Inversion Chr3 27220788 27384897
Inversion Chr3 32961504 32962155 2
Inversion Chr3 32961528 32962164 2

Translocations: 2

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr9 7171293 Chr1 17707523 OsKitaake01g180400
Translocation Chr9 7172872 Chr1 17707536 OsKitaake01g180400

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	10323499	T-C	Hetero	INTERGENIC
SBS	Chr1	15732887	T-C	Hetero	INTERGENIC
SBS	Chr1	23209014	C-T	Hetero	INTERGENIC
SBS	Chr1	27945045	T-A	Homo	INTERGENIC
SBS	Chr1	32566734	G-A	Hetero	INTERGENIC
SBS	Chr2	4536709	G-A	Hetero	INTRON
SBS	Chr2	8159767	C-T	Hetero	INTERGENIC
SBS	Chr2	18254211	G-A	Hetero	INTERGENIC
SBS	Chr3	19733341	C-T	Homo	INTERGENIC
SBS	Chr3	21032035	T-G	Homo	INTERGENIC
SBS	Chr3	31305442	C-T	Homo	INTRON
SBS	Chr3	31380020	C-T	Hetero	INTERGENIC
SBS	Chr3	35094920	T-C	Hetero	INTRON
SBS	Chr4	16850987	A-C	Hetero	INTERGENIC
SBS	Chr5	9226614	C-T	Hetero	INTERGENIC
SBS	Chr5	12209549	C-T	Homo	INTERGENIC
SBS	Chr5	12814724	G-A	Homo	INTERGENIC
SBS	Chr5	16700996	A-C	Homo	INTERGENIC
SBS	Chr5	17574581	G-A	Hetero	INTERGENIC
SBS	Chr5	21841062	C-T	Homo	UTR_3_PRIME
SBS	Chr5	22856272	C-T	Homo	INTERGENIC
SBS	Chr5	23314256	G-A	Homo	NON_SYNONYMOUS_CODING	OsKitaake05g194800
SBS	Chr5	25627276	G-C	Hetero	INTERGENIC
SBS	Chr6	265728	A-T	Hetero	SPLICE_SITE_REGION
SBS	Chr7	8476191	A-G	Homo	SYNONYMOUS_CODING
SBS	Chr7	11960113	G-A	Hetero	INTERGENIC
SBS	Chr7	25664165	G-A	Homo	INTRON
SBS	Chr7	27192154	G-T	Homo	STOP_GAINED	OsKitaake07g254401
SBS	Chr8	21879607	C-T	Homo	STOP_GAINED	OsKitaake08g165400
SBS	Chr8	25667308	A-T	Homo	INTERGENIC
SBS	Chr9	3907507	C-T	Homo	INTERGENIC
SBS	Chr9	7549880	G-A	Hetero	INTERGENIC
SBS	Chr10	1403305	C-A	Hetero	INTERGENIC
SBS	Chr10	5650840	C-A	Hetero	INTRON
SBS	Chr10	12517185	C-T	Hetero	INTERGENIC
SBS	Chr10	12834880	A-G	Hetero	INTERGENIC
SBS	Chr11	6927196	G-A	Hetero	INTERGENIC
SBS	Chr11	16638573	A-G	Hetero	INTERGENIC
SBS	Chr11	19079634	G-A	Homo	INTERGENIC
SBS	Chr12	6011251	C-G	Homo	INTERGENIC
SBS	Chr12	7769175	A-T	Homo	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr8	189546	189551	5
Deletion	Chr12	6023557	6023562	5
Deletion	Chr4	7040885	7040886	1
Deletion	Chr9	7174001	7220000	45999	OsKitaake09g041800
Deletion	Chr8	7757710	7757715	5
Deletion	Chr12	8664545	8664546	1
Deletion	Chr1	10116955	10116956	1
Deletion	Chr1	14304251	14304259	8
Deletion	Chr9	16407441	16407445	4
Deletion	Chr2	17241031	17241041	10
Deletion	Chr5	25029523	25029720	197
Deletion	Chr12	25313899	25313902	3
Deletion	Chr3	26952127	26952293	166
Deletion	Chr5	29261269	29261271	2	OsKitaake05g277600

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr1	13753135	14354482
Inversion	Chr1	13753148	14354493
Inversion	Chr3	27220788	27384897
Inversion	Chr3	32961504	32962155	2
Inversion	Chr3	32961528	32962164	2

Main menu

You are here

Search Kitaake

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes