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| Mutant Information |
|---|
| Mutant Name | FN-80 [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN-80 Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 20
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr2 | 2617079 | A-T | Hetero | INTERGENIC | |
| SBS | Chr2 | 2617080 | G-T | Hetero | INTERGENIC | |
| SBS | Chr2 | 3593639 | A-T | Hetero | INTERGENIC | |
| SBS | Chr2 | 15533489 | G-A | Hetero | INTERGENIC | |
| SBS | Chr2 | 15533490 | C-A | Hetero | INTERGENIC | |
| SBS | Chr3 | 15656417 | T-A | Homo | INTRON | |
| SBS | Chr3 | 35621695 | T-A | Homo | INTERGENIC | |
| SBS | Chr4 | 10587285 | A-G | Hetero | INTRON | |
| SBS | Chr4 | 16306927 | G-T | Hetero | INTERGENIC | |
| SBS | Chr4 | 16306932 | A-T | Hetero | INTERGENIC | |
| SBS | Chr4 | 17314444 | C-T | Hetero | INTERGENIC | |
| SBS | Chr4 | 19119598 | C-G | Hetero | INTERGENIC | |
| SBS | Chr4 | 23514606 | T-C | Homo | INTERGENIC | |
| SBS | Chr5 | 10004120 | C-T | Hetero | NON_SYNONYMOUS_CODING | OsKitaake05g089602 |
| SBS | Chr6 | 16077230 | T-C | Hetero | INTERGENIC | |
| SBS | Chr8 | 6460477 | C-T | Homo | INTERGENIC | |
| SBS | Chr8 | 10714614 | A-T | Hetero | INTERGENIC | |
| SBS | Chr9 | 8711769 | C-A | Hetero | INTERGENIC | |
| SBS | Chr10 | 9984317 | C-A | Hetero | INTERGENIC | |
| SBS | Chr11 | 18805356 | A-C | Hetero | INTERGENIC |
Deletions: 5
Insertions: 1
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Insertion | Chr2 | 18180096 | 18180098 | 1 |
Inversions: 3
Variant Type |
Chromosome |
Position 1 |
Position 2 |
Number of Genes |
| Inversion | Chr12 | 2776183 | 3160300 | 2 |
| Inversion | Chr5 | 26162201 | 27124910 | |
| Inversion | Chr5 | 26162203 | 27124933 |